1 5' 3' | 2 5' 3' | 3 5' 3' |
CTTCTGCGCCGGAGCTCTTCTTAACGGTTTCGCAACTGCCGTTTGGATGCTCATCGTTGGTCGTTTGTTACTCGGTTTCGGTATCGGCTTCACCAATCAGgtcttattttttatctaaatattacattttttacctcatacttttgttttcttcaaaacagacccaaatagctccataactcggtggaaactgttatttg...
species | Arabidopsis thaliana |
transcript | AT4G21480.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTTCGGTATCGGCTTCACCAATCAG TCTGTGCCGTTGTATCTCTCGGAGATGGCACCGTATAAATACAGAGGAGCAEST: gi|163986558|gb|ES202624.1|ES202624
genomic: TTTCGGTATCGGCTTCACCAATCAGgtcttatttt ... taatttacagTCTGTGCCGTTGTATCTCTCGGAGATGGCACCGTATAAATACAGAGGAGCA
EST: CGGTTTCGGTATCGGCTTCACCAATCAG TCTGTGCCGTTGTATCTCTCGGAGATGGCACCGTATAAATACAGAGGAGCAEST: gi|164079607|gb|ES208480.1|ES208480
genomic: CGGTTTCGGTATCGGCTTCACCAATCAGgtcttatttt ... taatttacagTCTGTGCCGTTGTATCTCTCGGAGATGGCACCGTATAAATACAGAGGAGCA
EST: TTCACCAATCAG TCTGTGCCGTTGTATCTCTCGGAGATGGCACCGTATAAATACAGAGGAGAC
genomic: TTCACCAATCAGgtcttatttt ... taatttacagTCTGTGCCGTTGTATCTCTCGGAGATGGCACCGTATAAATACAGAGGAG-C
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCTGCGCCGGAGCTCTTCTTAACGGTTTCGCAACTGCCGTTTGGATGCTCATCGTTGGTCGTTTGTTACTCGGTTTCGGTATCGGCTTCACCAATCAGgtcttattttttatctaaatattacattttttacctcatacttttgttttcttcaaaacagacccaaatagctccataactcggtggaaactgttatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaacag