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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGAGTTTTAAGACTAAGTACTCTGAGTTAGGTTCTGTTAAAGAAGAGCTTGAGCTTGCCAAGAAAATCTTTGCAGAGAATCCGACTTGGCCAGTGATTGgtaagactatatatatatgatcaagaatttaagagaatttgacaaagtttaatctttctatgaattgtgttgttttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G21210.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124704640|gb|EH796042.1|EH796042
EST:     ACTTGGCCAGTGATTG                         AAGTGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTAAGGCTTT
genomic: ACTTGGCCAGTGATTGgtaagactat ... tgttttgcagAAGTGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTAAGGCTTT
EST: gi|86087577|gb|DR383336.1|DR383336
EST:     TGAGCTTGCCAAGAAAATCTTTGCAGAGAATCCGACTTGGCCAGTGATTG                         AAGTGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTAAGGCTTT
genomic: TGAGCTTGCCAAGAAAATCTTTGCAGAGAATCCGACTTGGCCAGTGATTGgtaagactat ... tgttttgcagAAGTGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTAAGGCTTT
EST: gi|124830096|gb|EH914647.1|EH914647
EST:     AATCCGACTTGGCCAGTGATTG                         AAGTGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTAAGGCTTT
genomic: AATCCGACTTGGCCAGTGATTGgtaagactat ... tgttttgcagAAGTGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTAAGGCTTT
EST: gi|116424173|gb|EG466765.1|EG466765
EST:     TGAGCTTGCCAAGAAAATCTTTGCAGAGAATCCGACTTGGCCAGTGATTG                         AAGTGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTAAGGCTTT
genomic: TGAGCTTGCCAAGAAAATCTTTGCAGAGAATCCGACTTGGCCAGTGATTGgtaagactat ... tgttttgcagAAGTGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTAAGGCTTT
EST: gi|125027508|gb|EL099777.1|EL099777
EST:     TTGCAGAGAATCCGACTTGGCCAGTGATTG                         AAGTGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTAAGGCTTT
genomic: TTGCAGAGAATCCGACTTGGCCAGTGATTGgtaagactat ... tgttttgcagAAGTGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTAAGGCTTT
EST: gi|125243954|gb|EL258039.1|EL258039
EST:     GCCAAGAAAAATCTTTGCAGAGAATCCGACTTGGCCAGTGATTG                         AAGTGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTAAGGCTTT
genomic: GCCAAG-AAAATCTTTGCAGAGAATCCGACTTGGCCAGTGATTGgtaagactat ... tgttttgcagAAGTGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTAAGGCTTT
EST: gi|124950522|gb|EL025979.1|EL025979
EST:     TGAGCTTGCCAAGAAAATCTTTGCAGAGAATCCGACTTGGCCAGTGATTG                         AAGTGACAGAGAG
genomic: TGAGCTTGCCAAGAAAATCTTTGCAGAGAATCCGACTTGGCCAGTGATTGgtaagactat ... tgttttgcagAAGTGACAGAGAG
EST: gi|124928698|gb|EL006321.1|EL006321
EST:     TGCAGAGAATCCGACTTGGCCAGTGATTG                         AAGTGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTAAGGCTTT
genomic: TGCAGAGAATCCGACTTGGCCAGTGATTGgtaagactat ... tgttttgcagAAGTGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTAAGGCTTT
EST: gi|125024998|gb|EL097267.1|EL097267
EST:     TGAGCTTGCCAAGAAAATCTTTGCAGAGAATCCGACTTGGCCAGTGATTG                         AAGTGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTG
genomic: TGAGCTTGCCAAGAAAATCTTTGCAGAGAATCCGACTTGGCCAGTGATTGgtaagactat ... tgttttgcagAAGTGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTG
EST: gi|125226537|gb|EL240622.1|EL240622
EST:     TCTTTGCAGAGAATCCGACTTGGCCAGTGATTG                         AAGTGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTAAGGCTTT
genomic: TCTTTGCAGAGAATCCGACTTGGCCAGTGATTGgtaagactat ... tgttttgcagAAGTGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTAAGGCTTT
EST: gi|116424172|gb|EG466764.1|EG466764
EST:     TGAGCTTGCCAAGAAAATCTTTGCAGAGAATCCGACTTGGCCAGTGATTG                         AAGTGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTAAGGCTTT
genomic: TGAGCTTGCCAAGAAAATCTTTGCAGAGAATCCGACTTGGCCAGTGATTGgtaagactat ... tgttttgcagAAGTGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTAAGGCTTT
EST: gi|124740701|gb|EH831863.1|EH831863
EST:     GAGCTTGCCAAGAAAATCTTTGCAGAGAATCCGACTTGGACCAGTGATTG                         AAGTGACAGAGAG
genomic: GAGCTTGCCAAGAAAATCTTTGCAGAGAATCCGACTTGG-CCAGTGATTGgtaagactat ... tgttttgcagAAGTGACAGAGAG
EST: gi|125200019|gb|EL214973.1|EL214973
EST:     GAGAATCCGACTTGGCCAGTGATTG                         AAGTGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTAAGGCTTT
genomic: GAGAATCCGACTTGGCCAGTGATTGgtaagactat ... tgttttgcagAAGTGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTAAGGCTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCGAGTTTTAAGACTAAGTACTCTGAGTTAGGTTCTGTTAAAGAAGAGCTTGAGCTTGCCAAGAAAATCTTTGCAGAGAATCCGACTTGGCCAGTGATTGgtaagactatatatatatgatcaagaatttaagagaatttgacaaagtttaatctttctatgaattgtgttgttttgcag

- - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA