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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTCTGCCCGGATCAGTTCTAGCTTTTGAGAGCTGCGATATCTCAGGAGTCATTGTGCCATGGCTTTATGTTGGAATGTGCTTTTCAACTTTTTGTTGGgtaagtttcattttcttagggtagactcttgctaattactgaatcgcatgaataatcttttgatatttcctggaaattatatgttgctgaaaaaaagctg...

Basic information

species Arabidopsis thaliana
transcript AT4G20400.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G20400.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA05G30470.1 (Glycine max), 5'ss of exon 3
CCGTCTGCCCGGATCAGTTCTAGCTTTTGAGAGCTGCGATATCTCAGGAGTCATTGTGCCATGGCTTTATGTTGGAATGTGCTTTTCAACTTTTTGTTGGgtaagt---------ttcattttcttagggtagactcttgctaattactgaatcgcatgaataatcttttgatatttcctggaaattatatgttgctgaaaaaaagctg
 || ||||| || || |   ||  ||||||  |  | ||||||||||||||  | || |||||||| ||||||||||||||||||||  | ||||| |||||||||         | |||||||| ||  || |    ||| |   ||  | |   | | |||| |   ||||||| |    || ||   | ||  | |          
ACGACTGCCAGGTTCTGCCTTATGTTTTGAAGGAAGTGATATCTCAGGAGTTGTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGgtaagtagtgagaattgcattttctcagtctaaatctatgcaagaaacaaagtttaaggcataa-cagatgatattact---aattttctttttaatcactttc-----

upper sequence: AT4G20400.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G13610.1 (Glycine max), 5'ss of exon 2
CCGTCTGCCCGGATCAGTTCTAGCTTTTGAGAGCTGCGATATCTCAGGAGTCATTGTGCCATGGCTTTATGTTGGAATGTGCTTTTCAACTTTTTGTTGGgtaagtttcattttcttagggtagactcttgctaattactgaa--tcgcatgaataatcttttgatatttcctggaaattatatgttgctgaaaaaaagctg
 || ||| | || || |   ||  ||||||  |  | ||||||||||||||  | || |||||||| ||||||||||||||||||||  | ||||| ||||||||| | |      |    ||   |  |  |    |||  |  | | |   ||   |    || |    |   | |  |||    || || | ||||   
GCGACTGTCAGGTTCTGCATTATGTTTTGAAGGAAGTGATATCTCAGGAGTTGTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGgtaagtgttaggaatcttctctactttactaattgcaactagaggtagaacagatgcacacaaga-accaacacaagacaatacac-gcagagataaaggat

upper sequence: AT4G20400.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA15G22050.1 (Glycine max), 5'ss of exon 6
CCGTCTGCCCGGATCAGTTCTAGCTTTTGAGAGCTGCGATATCTCAGGAGTCATTGTGCCATGGCTTTATGTTGGAATGTGCTTTTCAACTTTTTGTTGGgtaagtttc---attttcttagggtagactc--ttgctaattactgaatcgcatgaataatcttttgatatt-tcctggaaattatatgttgctgaaaaaaagctg
||| ||||| || || || |||  || |||  |  | ||||| ||||||||  | ||||||||||| |||||||| ||||| |||||| | ||||| |||||||||      | ||| ||     || ||   ||  | ||||  | |  || | || |  | |  ||||   |  |   |||| | |||      |  | |    
CCGACTGCCAGGTTCTGTACTAAGTTATGAAGGAAGTGATATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGgtaagtgatgagaattttttgtccaagtctaaatttatgattaagggaaagcgttaaga--catgagatagaatattaccaattttttgtcatgacatgata----

upper sequence: AT4G20400.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA09G09970.1 (Glycine max), 5'ss of exon 6
CCGTCTGCCCGGATCAGTTCTAGCTTTTGAGAGCTGCGATATCTCAGGAGTCATTGTGCCATGGCTTTATGTTGGAATGTGCTTTTCAACTTTTTGTTGGgtaagtt--------tcattttcttagggtagactcttgct------aattactgaatcgcatgaataatcttttgatatttcctggaaattatatgttgctgaaaaaaagctg
||| ||||| || || || |||  || |||  |  | || || ||||||||  | ||||||||||| |||||||| ||||| |||||| | ||||| |||||||||         |  || ||  ||  || | |  || |      || |  |||  | |  || |    | ||  |||| ||      || | |||                
CCGACTGCCAGGTTCTGTACTAAGTTATGAAGGAAGTGACATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGgtaagtggtgagaaatttttatccaagtctaaatttatgattaaggaaagtgttgagacacgaga-tggaatattagtattaccatttttttttttgtcat-------------

upper sequence: AT4G20400.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv10s0092g00210.t01 (Vitis vinifera), 5'ss of exon 6
CCGTCTGCCCGGATCAGTTCTAGCTTTTGAGAGCTGCGATATCTCAGGAGTCATTGTGCCATGGCTTTATGTTGGAATGTGCTTTTCAACTTTTTGTTGGgtaagtttcatt--ttcttagggtagactcttgctaattactgaatcgcatgaataatcttttgatatttcctggaaattatatgttgctgaaaaaaagctg--
||| ||||| || || || ||   ||||||       ||||||||||||||  | || |||||||| ||||| || |||||||| ||| | ||||||||||||||||       ||| |     | |    | |      || ||    | ||| |||    | | |    |   |      || | | ||      ||||   
CCGACTGCCTGGTTCTGTACTTTGTTTTGAACAAAATGATATCTCAGGAGTTCTGGTCCCATGGCTCTATGTCGGGATGTGCTTCTCATCATTTTGTTGGgtaagttatgggaattcctctatcaaagctgtacatgacgctaaa----aagaaaaattaaataaaaagggcaaaaggcagaatctcgttgttcttcagctttg