1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGCGTTAGTCGGATGCATACTCGATTAGGTTCATCGAAGAAAATGGTGGAGAACCTTGCTTTCTCAGCTATTCTTAGCAATAAGAAACAATATAATCCTGgtatatatggaagcttttgactaacttgttgatcaaagatgaagttaagtttttgtcttatgggtttggttggttcttcttggaaatggcag
species | Arabidopsis thaliana |
transcript | AT4G19420.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAACCTTGCTTTCTCAGCTATTCTTAGCAATAAGAAACAATATAATCCTG ATTTTTACAATTGGAATAGAGTGAAAGTTAGATACTGTGACGGGGCATCATEST: gi|86031812|gb|DR327565.1|DR327565
genomic: GAACCTTGCTTTCTCAGCTATTCTTAGCAATAAGAAACAATATAATCCTGgtatatatgg ... gaaatggcagATTTTTACAATTGGAATAGAGTGAAAGTTAGATACTGTGACGGGGCATCAT
EST: GAACCTTGCTTTCTCAGCTATTCTTAGCAATAAGAAACAATATAATCCTG ATTTTTACAATTGGAATAGAGTGAAAGTTAGATACTGTGACGGGGCATCAT
genomic: GAACCTTGCTTTCTCAGCTATTCTTAGCAATAAGAAACAATATAATCCTGgtatatatgg ... gaaatggcagATTTTTACAATTGGAATAGAGTGAAAGTTAGATACTGTGACGGGGCATCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCGTTAGTCGGATGCATACTCGATTAGGTTCATCGAAGAAAATGGTGGAGAACCTTGCTTTCTCAGCTATTCTTAGCAATAAGAAACAATATAATCCTGgtatatatggaagcttttgactaacttgttgatcaaagatgaagttaagtttttgtcttatgggtttggttggttcttcttggaaatggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA