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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATGGTTGATTTATTTGGTGTGTTCGTTAGTAATAATGAACACAGAAGGACTGTTTGTCAATATTACATTTGTTCGAAACGCAGTCGCTAAAGGGGCCGgtgagttattaattctgtttatatatttattcattattgttcctatatagtatatttttgtgtttttttattcttcatctatgtcttttggttttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G19420.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116427943|gb|EG470535.1|EG470535
EST:     ACTGTTTGTCAATATTACATTTGTTCGAAACGCAGTCGCTAAAGGGGCCG                         TTTGTTTAGATGGAAGTCCACCAGCTTATCATTTGGATAGAGGTTCTGGAA
genomic: ACTGTTTGTCAATATTACATTTGTTCGAAACGCAGTCGCTAAAGGGGCCGgtgagttatt ... ggttttgcagTTTGTTTAGATGGAAGTCCACCAGCTTATCATTTGGATAGAGGTTCTGGAA
EST: gi|124708644|gb|EH800046.1|EH800046
EST:     TGTTTGTCAATATTACATTTGTTCGAAACGCAGTCGCTAAGGGGGCCG                         TTTGTTTAGATGGAAGTCCACCAGCTTATCATTTGGATAGAGGTTCTGGAA
genomic: TGTTTGTCAATATTACATTTGTTCGAAACGCAGTCGCTAAAGGGGCCGgtgagttatt ... ggttttgcagTTTGTTTAGATGGAAGTCCACCAGCTTATCATTTGGATAGAGGTTCTGGAA
EST: gi|116448741|gb|EG491333.1|EG491333
EST:     ACTGTTTGTCAATATTACATTTGTTCGAAACGCAGTCGCTAAAGGGGCCG                         TTTGTTTAGATGGAAGTCCACCAGCTTATCATTTGGATAGAGGTTCTGGAA
genomic: ACTGTTTGTCAATATTACATTTGTTCGAAACGCAGTCGCTAAAGGGGCCGgtgagttatt ... ggttttgcagTTTGTTTAGATGGAAGTCCACCAGCTTATCATTTGGATAGAGGTTCTGGAA
EST: gi|125191744|gb|EL206698.1|EL206698
EST:     TACATTTGTTCGAAACGCAGTCGCTAAAGGGGCCG                         TTTGTTTAGATGGAAGTCCACCAGCTTATCATTTGGATA
genomic: TACATTTGTTCGAAACGCAGTCGCTAAAGGGGCCGgtgagttatt ... ggttttgcagTTTGTTTAGATGGAAGTCCACCAGCTTATCATTTGGATA