Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCCTCCTGGTGCTTACCCTGCTGCGCCCGGTGGTTATCCTCCTGCACCTGGAGGTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAGgtatgcattgtctcgttaaagagctcttctttgtagttttggtaaatgttgatgttttctatgcaaaagctatggagtgtccttgtagcttgcttggatt...

Basic information

species Arabidopsis thaliana
transcript AT4G19200.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124938962|gb|EL015544.1|EL015544
EST:     CTGGCTATCCTGCACCTGGAGCTCACCATTCAG                         GACATTCTGGTGGTGGACTCGGAGGCATGATAGCAGGTGCAGCTGGTGCA
genomic: CTGGCTATCCTGCACCTGGAGCTCACCATTCAGgtatgcattg ... tttccatcagGACATTCTGGTGGTGGACTCGGAGGCATGATAGCAGGTGCAGCTGGTGCA
EST: gi|86081916|gb|DR377675.1|DR377675
EST:     CTGCACCTGGAGCTCACCATTCAG                         GACATTCTGGTGGTGGACTCGGAGGCATGATAGCAGGTGCAGCTGGTGCAG
genomic: CTGCACCTGGAGCTCACCATTCAGgtatgcattg ... tttccatcagGACATTCTGGTGGTGGACTCGGAGGCATGATAGCAGGTGCAGCTGGTGCAG
EST: gi|164087727|gb|EL982076.1|EL982076
EST:     TGGAGGTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAG                         GACATTCTGGTGGTGG
genomic: TGGAGGTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAGgtatgcattg ... tttccatcagGACATTCTGGTGGTGG
EST: gi|86081851|gb|DR377610.1|DR377610
EST:     GTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAG                         GACATTCTGGTGGTGGACTCGGAGGCATGATAGCAGGTGCAGCTGGTGCAG
genomic: GTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAGgtatgcattg ... tttccatcagGACATTCTGGTGGTGGACTCGGAGGCATGATAGCAGGTGCAGCTGGTGCAG
EST: gi|116485076|gb|EG527668.1|EG527668
EST:     TGGAGGTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAG                         GACATTCTGGAGGTGGACCCGGAGG
genomic: TGGAGGTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAGgtatgcattg ... tttccatcagGACATTCTGGTGGTGGACTCGGAGG
EST: gi|116485084|gb|EG527676.1|EG527676
EST:     TGGAGGTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAG                         GACATTCTGGAGGTGGAC
genomic: TGGAGGTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAGgtatgcattg ... tttccatcagGACATTCTGGTGGTGGAC
EST: gi|116485079|gb|EG527671.1|EG527671
EST:     TGGAGGTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAG                         GACATTCTGGAGGTGGACCCGGAGG
genomic: TGGAGGTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAGgtatgcattg ... tttccatcagGACATTCTGGTGGTGGACTCGGAGG
EST: gi|116485073|gb|EG527665.1|EG527665
EST:     TGGAGGTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAG                         GACATTCTGGAGGTGGACCCGGAGG
genomic: TGGAGGTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAGgtatgcattg ... tttccatcagGACATTCTGGTGGTGGACTCGGAGG
EST: gi|116485067|gb|EG527659.1|EG527659
EST:     TGGAGGTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAG                         GACATTCTGGAGGTGGACCCGGAGG
genomic: TGGAGGTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAGgtatgcattg ... tttccatcagGACATTCTGGTGGTGGACTCGGAGG
EST: gi|116485092|gb|EG527684.1|EG527684
EST:     TGGAGGTTACCCTCCTGCTGGCTATCCTGCACCCGGAGCTCACCATTCAG                         GACATTCTGGAGGTGGACCCGGAGG
genomic: TGGAGGTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAGgtatgcattg ... tttccatcagGACATTCTGGTGGTGGACTCGGAGG
EST: gi|47828251|gb|CK117935.1|CK117935
EST:     TGGAGGTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAG                         GACATTCTGGTGGTGGACTCGGAGGCATGATAGCAGGTGCAGCTGGTGCAG
genomic: TGGAGGTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAGgtatgcattg ... tttccatcagGACATTCTGGTGGTGGACTCGGAGGCATGATAGCAGGTGCAGCTGGTGCAG
EST: gi|116485087|gb|EG527679.1|EG527679
EST:     TGGAGGTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAG                         GACATTCTGGAGGTGGACCCGGAGG
genomic: TGGAGGTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAGgtatgcattg ... tttccatcagGACATTCTGGTGGTGGACTCGGAGG
EST: gi|116485083|gb|EG527675.1|EG527675
EST:     TGGAGGTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAG                         GACATTCTGGAGGTGGACCCGGAGG
genomic: TGGAGGTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAGgtatgcattg ... tttccatcagGACATTCTGGTGGTGGACTCGGAGG
EST: gi|116485090|gb|EG527682.1|EG527682
EST:     TGGAGGTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAG                         GACATTCTGGAGGTGGACCCGGAGG
genomic: TGGAGGTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAGgtatgcattg ... tttccatcagGACATTCTGGTGGTGGACTCGGAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATCCTCCTGGTGCTTACCCTGCTGCGCCCGGTGGTTATCCTCCTGCACCTGGAGGTTACCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAGgtatgcattgtctcgttaaagagctcttctttgtagttttggtaaatgttgatgttttctatgcaaaagctatggagtgtccttgtagcttgcttggatt

- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgcttg