1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCATAAGACAAGATTATATATTGGACAGTTAGTGAAAGATACATCAGCTAAACTTAAAGAAGCTAGTGAAACTGATCATCAAAGAGGTGTAAATgtgagtcatttatgataaaggaagattcttgttcttcttctgctacttctgttgattaataggaatttgattggttggttag
species | Arabidopsis thaliana |
transcript | AT4G17730.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAGCTAAACTTAAAGAAGCTAGTGAAACTGATCATCAAAGAGGTGCAAAT CAAAAGAAGAAGATTGTGGATGCTAAGCTTGCAAAGEST: gi|164061352|gb|EL992666.1|EL992666
genomic: CAGCTAAACTTAAAGAAGCTAGTGAAACTGATCATCAAAGAGGTGTAAATgtgagtcatt ... ggttggttagCAAAAGAAGAAGATTGTGGATGCTAAGCTTGCAAAG
EST: CAGCTAAACTTAAAGAAGCTAGTGAAACTGATCATCAAAGAGGTGCAAAT CAAAAGAAGAAGATTGTGGATGCTAAG
genomic: CAGCTAAACTTAAAGAAGCTAGTGAAACTGATCATCAAAGAGGTGTAAATgtgagtcatt ... ggttggttagCAAAAGAAGAAGATTGTGGATGCTAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATAAGACAAGATTATATATTGGACAGTTAGTGAAAGATACATCAGCTAAACTTAAAGAAGCTAGTGAAACTGATCATCAAAGAGGTGTAAATgtgagtcatttatgataaaggaagattcttgttcttcttctgctacttctgttgattaataggaatttgattggttggttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG