1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAAGTGATCCAGGCATGGTATATGGATGATAGCGAAGAGGATCAGAGACTTCCTCACCACAAGGATCCTAAGGAGTTTCTATCTTTGGACAAACTTGCAGgtctctttgtgtgtttcaattcagtgttcttctctctgtttctctatttgtttcagatgtaatgtttgtgtgcag
species | Arabidopsis thaliana |
transcript | AT4G14710.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCTAAGGAGTTTCTATCTTTGGACAAACTTGCAG AGCTGGGAGTACTTAGCTGGAGACTTGATGCTGATAACTATGAAACCGATGEST: gi|124757542|gb|EH847672.1|EH847672
genomic: CCTAAGGAGTTTCTATCTTTGGACAAACTTGCAGgtctctttgt ... ttgtgtgcagAGCTGGGAGTACTTAGCTGGAGACTTGATGCTGATAACTATGAAACCGATG
EST: TCCTCACCACAAGGATCCTAAGGAGTTTCTATCTTTGGACAAACTTGCAG AGCTGGGAGTACTTAGCTGGAGACTTGATGCTGEST: gi|86082287|gb|DR378046.1|DR378046
genomic: TCCTCACCACAAGGATCCTAAGGAGTTTCTATCTTTGGACAAACTTGCAGgtctctttgt ... ttgtgtgcagAGCTGGGAGTACTTAGCTGGAGACTTGATGCTG
EST: GACAAAC-TGCAG AGCTGGGAGTACTTAGCTGGAGACTTGATGCTGATAACTATGAAMCCGATG
genomic: GACAAACTTGCAGgtctctttgt ... ttgtgtgcagAGCTGGGAGTACTTAGCTGGAGACTTGATGCTGATAACTATGAAACCGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGTGATCCAGGCATGGTATATGGATGATAGCGAAGAGGATCAGAGACTTCCTCACCACAAGGATCCTAAGGAGTTTCTATCTTTGGACAAACTTGCAGgtctctttgtgtgtttcaattcagtgttcttctctctgtttctctatttgtttcagatgtaatgtttgtgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG