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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgcttttccttgtcttgatctctaattactgtcttctatgtgagaaccaatttaggatttcagaattgactctgtgaaatatgtcttataggaatgatttgttaattggaccttgctcattatttgtctttctttggaacag

Basic information

species Arabidopsis thaliana
transcript AT4G14320.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os07g33898.1 (Oryza sativa), 5'ss of exon 2
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtat-------actcgcttttccttgtcttgatctcta-attactgtct-tctatgtgagaaccaatttaggatttca-gaattgactctgtgaaatatgt-cttataggaatga-------------tttgttaattggacctt--gctcattatttgtctttctttggaacag---------------
 ||||| ||||| || |||||  ||||||| |||||||| |||||||| ||||| || || || ||||| |||||||||||||| || ||||||||||||||||         |    | |  ||     |  || |   | | ||||| |||   | |||| ||   || | | ||| || |||  |||||  |||     | | | | ||| |             ||  |  ||  ||| ||  |||    |||| || |  | ||  |||                
CAAGAAGGGTAAGGACAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGTAAGCAGTCAGGATATGGTGGTCAGACCAAGCCTGTTTTCCACAAGAAGgtattgtgacagtttatatgtgattacgcagtgctgtgtgtgattgtctctcttcattagaaaca---tatggtgtcatgatttgtgtctgttcaatgcaaacatgtggcaataaccatcatgtagttttaatgtatctgactttcagctgtgcatttttcatgttatgatacatggttcctgttttcag

upper sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os07g33860.1 (Oryza sativa), 5'ss of exon 2
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgcttttccttgtcttgatctctaattactgtcttctatgtgagaaccaatttaggatttcagaattgactctgtgaaatatgtcttataggaatgatttgttaattggaccttgctcattatttgtctttctttggaacag
 ||||| ||||| || |||||  ||||||| |||||||| |||||||| ||||| || || || ||||| |||||||||||||| || |||||||||||||||   |  |  ||  |     ||||       | | || || | |||||    |  || |    ||   ||   |   ||| |    ||   |||  |    || |||                                        
CAAGAAGGGTAAGGACAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGTAAGCAGTCAGGATATGGTGGTCAGACCAAGCCTGTTTTCCACAAGAAGgtactgtgacagtttata--tatgatta-----tgcagtgttgtgtgtgactctctgttca----ttagaaacatatggtgtcatgattgatgtatcagtgctatgtgtct--------------------------------------

upper sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os07g33880.1 (Oryza sativa), 5'ss of exon 2
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgct-tttccttgtcttgatctctaattac---tgtcttctatgtgagaaccaatttaggatttcagaattgact---ctgtgaaatatgtct-tatag-gaatgatttgttaattggaccttgctcattatt-----tgtctttctttggaacag----------------------------------
 ||||| ||||| || |||||  ||||||| |||||||| |||||||| || || || || || ||||| |||||||||||||| || |||||||||||||||   |  |  |||   | |  | ||      ||     || ||      | |  |  ||  || | | |||  |||||     | |||| || ||||| || |  | |||      |||      | |  |  | |||     || |||||    |  ||                                   
CAAGAAGGGTAAGGACAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGAAAGCAGTCAGGATATGGTGGTCAGACCAAGCCTGTTTTCCACAAGAAGgtactgtgacagtttatatatgattatgcagtgttgtgtgtgactctctgttcattagaaacgtacggtgtcatgattgatgtagcagtgatatgtgtctgtacaatgcatgtggcaataaccatcacgtagttttaattgcatgtggctttcagctgtgcatttttcatgttatgatacatggttcctgttttcag

upper sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os07g26740.1 (Oryza sativa), 5'ss of exon 2
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgcttttccttgtcttgatctctaattactgtcttctatgtgagaaccaatttaggatttcagaattgactctgtgaaatatgtcttataggaatgatttgttaattggaccttgctcattatttgtctttctttggaacag
 |||||||| || ||||||||| |||| || || |||||||||||||| || || || || || ||||| || ||||| ||||| || || ||||||||||| |                |||||| |||     || |    |  |        ||||||     |    | |  || |||    || || ||       ||   ||||||||           | |||||||  |  ||  |     
CAAGAAAGGAAAGGATAGCCTTTCTGCTCAGGGGAAGCGTCGTTATGACCGCAAGCAGTCAGGATATGGTGGGCAGACAAAGCCTGTTTTTCACAAGAAGgtttg-------------accttgatttct-----ctatgccttgcg--------aatttaaaggatagctactagct-tgtttggta-gtgttgcttctgtg---tgttaatttacttacctctaatatttgttgtcattcag-----

upper sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G160351_T03 (Zea mays), 5'ss of exon 2
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgt---atactcgcttttccttgtcttgatctctaattactgtcttctatgtgagaaccaatttaggatttcagaat-tgactctgtgaaatatgt-cttataggaatgatttgttaattggaccttgctcattatttgtctttctttggaacag
 ||||||||||| ||||||||| | || ||||| ||||| |||||||| || ||||| ||||| ||||| |||||||| ||||| || ||||||||||||||   | ||    | |    ||| |  |   | ||||||   ||       ||   |   ||| ||| |||  |||  |  ||  | |  ||  | |||      ||                                               
CAAGAAAGGTAAGGATAGCCTTTCAGCTCAAGGGAAGCGACGTTATGACCGCAAACAGTCTGGATATGGTGGTCAGACAAAGCCTGTTTTCCACAAGAAGgttcaacacaaattctctactgtttgcagtaccaattacatact-------gaaggctgcttttggagttcttaatgcggatcctttatttacttgcttcctaacat-----------------------------------------------

upper sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G160351_T01 (Zea mays), 5'ss of exon 2
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgt---atactcgcttttccttgtcttgatctctaattactgtcttctatgtgagaaccaatttaggatttcagaat-tgactctgtgaaata--tgtcttataggaatgatttgttaattggaccttgctcattatttgtctttctttggaacag
 ||||||||||| ||||||||| | || ||||| ||||| |||||||| || ||||| ||||| ||||| |||||||| ||||| || ||||||||||||||   | ||    | |    ||| |  |   | ||||||   ||       ||   |   ||| ||| |||  |||  |  ||  | |  ||  ||  |  ||  | | | |  |   |     |                              
CAAGAAAGGTAAGGATAGCCTTTCAGCTCAAGGGAAGCGACGTTATGACCGCAAACAGTCTGGATATGGTGGTCAGACAAAGCCTGTTTTCCACAAGAAGgttcaacacaaattctctactgtttgcagtaccaattacatact-------gaaggctgcttttggagttcttaatgcggatcctttatttacttgcttcctaacattaactcttcggtctattcag----------------------------

upper sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G125527_T02 (Zea mays), 5'ss of exon 2
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgcttttccttgtcttgatctctaattactgtcttctatgtgagaaccaatttaggatttcagaattgactctgtgaaatatgtcttataggaatgatttgttaattggaccttgctcattat-ttgtctttctttggaacag
|||||| || || ||||||||  ||||||| |||||||| |||||||| || || || || || ||||| |||||||||||||| ||||||||||||||||||     || | ||  | |  |  |   ||  |||  |  ||| | |     | |   |     |    || |  ||  |     ||  |        | |||||  |   | |||  |  |  || |  |||| ||| |      |||
TAAGAAGGGCAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGTCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgcagcatatctatttgattgtactta--tacctttgtctgttttgatgctagcatgaatgtctgaaaatatctgcgaattctaaatgcctgttcagtgattaat--gtgggatatgacaaatgagattgtatttatacctttcag

upper sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G009412_T01 (Zea mays), 5'ss of exon 2
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgta------tactcgcttttccttgtcttgatctctaatta--ctgtcttctatgtgagaaccaatttaggatttcagaattgactctgtgaaatatgtct---tataggaatgatttgttaattggaccttgctcattatttgtctttctttggaacag
 ||||| ||||| ||||||||  ||||||| |||||||| |||||||| || || || || || ||||| || ||||||||||| ||||||||||||||||||      ||  |   | |  ||||  |  |     || |  |  || ||| |||  |     ||    |  |  |  | |||   |    |  || |||   | |  |   | |      |||||    ||   | | || ||  || |  |      
CAAGAAGGGTAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagtatacctatgtgattgtactattgctccatcaatccttcatctttgtccgttttgatgctagcatgaaagactgaaaataactaccatttctaaatgtctgttgggtgcacagattgggatatgacaaatgtt-gtgattttcag------

upper sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G103059_T01 (Zea mays), 5'ss of exon 2
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgcttttccttgtcttgatctctaattactgtcttctatgtgagaaccaatttaggatttcagaattgactctg----tgaaatatgtcttataggaatgatttgttaattggaccttgctcattatttgtctttctttggaacag
|||||| || || |||||| |  ||||||| ||||||||||||||||| || || || || ||  |||| |||||||||||||| ||||||||||||||||||      | | ||  | |  |  |   ||  |||  |  ||| | |       |   |     |  |||| |  ||  |      ||||   | ||    |||| |||||  |  ||     || | ||| | |   |  ||||       
TAAGAAGGGCAAGGATAGCATGTCTGCCCAGGGAAAGCGTCGTTATGACCGCAAGCAGTCAGGACATGGTGGTCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgcaacatatctatttgattgtactta--tacctttgtctgttttgatggtagcatgaatgtctagaaatatctgcgaattctaaatgcctgttgagagaataatttgggatatgacaaatg-tgattgtattaatacctttcag----

upper sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G19320.1 (Glycine max), 5'ss of exon 2
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgcttttccttgtcttgatctctaattactgtcttctatgtgagaaccaatttaggatttcagaattgactctgtgaaatatgtcttataggaatgatttgttaattggaccttgctcattatttgtctttctttggaacag
 ||||| |||||||||||| |||||||||||||||| || ||||| ||||| ||||||||||||||||| || || || ||||||||||||||||||||||||  ||| | ||  | |   |  ||    | |    || || |   ||| ||  |  ||   ||||   |||||| |                                                                       
CAAGAAGGGTAAAGATAGCATTGCTGCCCAAGGAAAACGCCGTTACGATCGCAAACAATCTGGTTATGGCGGACAAACTAAGCCCGTCTTCCACAAGAAGgtaacctctcgttaacctaagtgcataggaattaggagtttttttcctgacaaaaacatttttattttt-aattgattag---------------------------------------------------------------------

upper sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA15G05670.2 (Glycine max), 5'ss of exon 2
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgcttttccttgtcttgatctctaattactgtcttctatgtgagaaccaatttaggatttcagaattgactctgtgaaatatgtcttataggaatgatttgttaattggaccttgctcattatttgtctttctttggaacag
 ||||| ||||| |||||| |||||||||||||||| || ||||||||||| |||||||| |||||||| || || || |||||||||||||||||||||||           || |||  |  || | |  |||        |   |  |||     ||||||| |     ||    |||  ||| || | || |       | | |                                         
CAAGAAGGGTAAGGATAGCATTGCTGCCCAAGGAAAACGCCGTTATGATCGCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgt-----------tcgttggttaaatatttcgttataag----tgcataggaa-----ttaggatctttttttttttgctgacaaaaatatatttttatttaaaatag-----------------------------------------

upper sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA05G24930.1 (Glycine max), 5'ss of exon 2
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgcttttccttgtcttgatctctaattactgtcttctatgtgagaaccaatttaggatttcagaattgactctgtgaaatatgtcttataggaatgatttgttaattggaccttgctcattatttgtctttctttggaacag
 ||||| || || || ||| | || || || ||||| || |||||||| || ||||| || ||||| || || |||||||||||||| |||||||| |||||| | |  ||  |  ||  |   | | ||   |  ||  || ||| ||  ||  ||||||   ||    |||| | |                                                                       
CAAGAAGGGCAAGGACAGCATCGCCGCTCAGGGAAAACGCCGTTATGACCGCAAACAGTCCGGTTACGGTGGCCAGACCAAGCCCGTTTTCCACAAAAAGgtacaatt-ctactgtttcccccaaacactgccttatggtttttat-tgctaat-aatttacttttaattaattaattag---------------------------------------------------------------------

upper sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv01s0011g02090.t01 (Vitis vinifera), 5'ss of exon 2
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgcttttccttgtcttgatctctaa-ttactgtcttctat-gtgagaaccaatttaggatttcagaatt----gactctgtgaaatatgtcttataggaatgatttgttaattggaccttgctcattatttgtctttctttggaacag-
 ||||| |||||||||||| | |||||||||||||||||  | || || || |||||||| ||||||||||| ||||| || ||||||||||||||||||||| |  | ||||  || |  ||   ||||   || |  |  || || ||   |      |||  ||   |||  |    |  | | | |||| |||  || | |  |     |  || |   | | ||   | ||   ||||| | |  |||   
CAAGAAGGGTAAAGATAGCTTAGCTGCCCAAGGAAAGCGCAGGTACGACCGCAAACAATCAGGTTATGGAGGACAGACAAAACCCGTCTTCCACAAGAAGgtaaagaccctttctctggcattctcctcttccttgcaattatcaattgtttcatgtttcttataatgagagagcttgtaggatttttcaaatctgtagtagaagcttataagggcaaatccccatagcat-tgatccatctttttctcaaaccag

upper sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv13s0064g00880.t01 (Vitis vinifera), 5'ss of exon 2
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgcttttccttgtcttgatctctaattactgtcttctatgtgagaa--ccaatttagg-atttcagaattgactctgtgaaatatgtcttataggaatgatttgttaattggaccttgctcattatttgtctttctttggaacag
 ||||| || || |||||| | || || ||||| |||||  | |||||||| ||||| || ||||||||||| |||||||| |||||||||||||| |||||| || | ||  ||    ||     |        || | ||  || |||  |  | ||| | |  ||||  |||     |||       ||||  ||||   |                                                
CAAGAAGGGCAAGGATAGCTTAGCCGCACAAGGGAAGCGGAGGTATGATCGCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccctcatc----tcacttccctcggcatcttttttagatttgaataatctaatctggttatttttgaacatgatcta-atttcatgtaatataatgag-----------------------------------------------

upper sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 3
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgcttttccttgtcttgatctct----aattactgtcttctatgtgagaaccaatttaggatt-tcagaattgactctgtgaaatatgtcttataggaatgatttgttaattggaccttgctcattatttgtctt-tctttggaacag
 |||||||| |||||||||||||| ||||| || || || || |||||||| ||||| || || |||||||| |||||||| || ||||||||||| |||||| ||   |  |   |   |||  |  ||    ||||     | | | | | ||        ||   || |||||  |  || | |   |||| | ||||| |    |||| | |  |   | ||| |   | ||   ||  ||     | |||
CAAGAAAGGAAAAGATAGCCTTGCAGCCCAGGGGAAACGCCGGTATGATCGGAAACAGTCAGGCTATGGAGGACAGACCAAACCTGTCTTCCACAAAAAGgta-acaatccatctatatccttatttccttggaaattttaaccctttttttaagttgtgtgatacttttctcagagattgctattt---atat-ttttatatgccaaattt-tca--taacctttgattgcttttcacctaatcacctaatcag

upper sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: EDP05070 (Chlamydomonas reinhardtii), 5'ss of exon 3
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgcttttccttgtcttgatctctaattactgtcttct-atgtgagaaccaatttaggatttcagaattgactctgtgaaatatgtcttataggaatgatttgttaattggaccttgctcattatttgtctttctttggaacag
                                | ||||| || || || || || || || ||||| || ||||||||||||||||||||||||||||||||   |           || |  |   | | ||    || |  | | |||   |||  |  |||  |   |    |     |   | |           | |||                                              
--------------------------------GCAAGCGCCGCTACGACCGCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcga---cagagctggcgcggcatgttatgggcgtatcttgaagtggtgaccg-tggaggggtgggggtggggtgaggctgagtgctggcgcagcggatg----------------------------------------------

upper sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S22_326V6.1 (Physcomitrella patens), 5'ss of exon 3
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgcttttccttgtcttgatctctaattactgtcttctatgtgagaaccaatttaggatttcagaattgactctgtgaaatatgtcttataggaatgatttgttaattggaccttgctcattatttgtctttctttggaacag
                                | ||| |  | |||||  | |||||||| || || ||||||||||||||||| |||||||||||||||||||  | || |   |    | ||||     ||       |||  | | ||||    |||||||| ||    |  |  |||  |  |  || || |  |  |  | |                                          
--------------------------------GTAAGAGGAGATATGACAGGAAACAATCAGGATACGGAGGTCAGACCAAGCCTGTCTTCCACAAGAAGgtatg-ttgcgtaatcagcacctgatgaagcatgggcag-ttcactctcagaat---tttaggatgtctcg-tcaatcctgctatctcagtgtt-tgtgtttcgtgt------------------------------------------

upper sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S115_63V6.1 (Physcomitrella patens), 5'ss of exon 3
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgcttttcct---tgtcttg-atctctaattactgtcttctatgtgagaaccaatttaggatttcagaattgactctgtgaaatatgtcttataggaatg--atttgttaattg--gaccttgctcattatttgtctttctttggaacag
                                ||||| | ||||||||  | ||||| || || |||||||||||||||||||||||||| || || |||||   ||    | |  |   ||||||| |||  ||  |  || || || |       |    | |   |     | || | |   | || ||| |  | |||  ||   || ||||  ||   |||  ||||||  |      | |   || |    
--------------------------------GAAAGAGGCGTTATGACAGGAAACAGTCCGGATATGGAGGTCAGACCAAGCCCGTCTTTCATAAAAAGgttagcttaactctgttgtatgtcttggatcaatatgttgtgactcct-ttcagtggctgcctaaatctcatgcagttaaatactttaactatttaatttagtgattgtatatgttgctttttgactatgctcaccagaatcttgtgcgtgcag---

upper sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S6_198V6.1 (Physcomitrella patens), 5'ss of exon 3
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgt-----atactcgcttttccttgtcttgatctctaattactgtcttctatgtgagaaccaatttaggatttcagaattgactctgtgaaatatgtcttataggaatgatttgttaattggaccttgc----tcattatttgtctttctttggaacag----------
                                ||||| | ||||||||| | || || || ||||| ||||||||||||||||||||||| |||||||||||     | || |  |  |   | ||  | | |    | ||| |  | || | |  | |    ||     |      |||| ||      ||||||||  |     | || | | |  || |  ||      |    |  | |  |  | || | |            
--------------------------------GAAAGAGGCGTTATGATAGGAAGCAGTCGGGTTACGGAGGTCAGACCAAGCCCGTCTTTCACAAGAAGgttagctaaacccagtcgtgtatttcgaggttttatgtcactattcttta-gagtcatctggcttgtacgtgatttgttgaatcatgttcatatgtctcgtcaatctcatatctcatgtgtatattatggcgtttcgagctatgctcatgtgaaccgtattattgcag

upper sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S2_415V6.1 (Physcomitrella patens), 5'ss of exon 3
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgcttttccttgtcttgatctctaattactgtcttctatgtgagaaccaatttaggatttcagaattgactctgtgaaatatgtcttataggaatgatttgttaattggaccttgctcattatttgtctttctttggaacag
                                | ||| | ||||||||  | || |||||||| |||||||||||||| ||||| ||||| ||||||||||| |  |      ||     |   || | |    |     |||  ||        | |||  |||||  |  || ||    |  |||  ||||| |  | |  ||||                                          
--------------------------------GTAAGAGGCGTTATGACAGGAAGCAATCTGGGTATGGAGGTCAGACGAAGCCAGTCTTTCACAAGAAGgtttgttt-tgcctcacaaccgcaatgtatcccgatgcatttccgtggcttctttatttt--gattttcgtttttacaaaat--aattcgtcttctttgca--attt------------------------------------------

upper sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S74_73V6.1 (Physcomitrella patens), 5'ss of exon 3
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatact---cgcttttccttgtcttga---tctctaattactgtcttctatgtgagaaccaatttaggatttcagaattgactctgtgaaatatgtcttataggaatgatttgttaattggaccttgctcattatttgtctttctttggaacag
                                | ||| | ||||||||  | || ||||| ||||| ||||||||||||||||| ||||| |||||||||||   ||   | || || || ||| |||   | ||||||    || |||| | |     |   |  ||  |    |  ||   || || |||| | | ||   | |                                                 
--------------------------------GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaaccctcttactcgtcatgagaatttctaatactagttttctttat-----cgcttacagcgtacttgctttatttcggttaaattt-tattgctgaa-------------------------------------------------

upper sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: EFJ07113 (Selaginella moellendorffii), 5'ss of exon 3
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgcttttccttgtcttgatctctaattactgtcttctatgtgagaaccaatttaggatttcagaattgactctgtgaaatatgtcttataggaatgatttgttaattggaccttgctcattatttgtctttctttggaacag
                                | ||| | ||||| ||||| || |||||||| ||||| ||||| || |||||||| || ||||||||||||       ||  |    |  ||  ||| |||   | |   || | |       | |  | || | |||                                                                               
--------------------------------GTAAGAGGCGTTACGATCGCAAGCAATCTGGCTATGGCGGTCAAACGAAGCCCGTGTTTCACAAGAAGgtaggaaactttcgctgcctgctgtgctccaatcgatctaagctctctccctgtgattgaatgaatgcag-------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86025732|gb|DR321485.1|DR321485
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025711|gb|DR321464.1|DR321464
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025719|gb|DR321472.1|DR321472
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025712|gb|DR321465.1|DR321465
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAABCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025682|gb|DR321435.1|DR321435
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAA
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAA-
EST: gi|164235690|gb|ES119571.1|ES119571
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAA
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAA
EST: gi|164234692|gb|ES021691.1|ES021691
EST:     TAAACAATCTGGTTATGGTAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTT
genomic: TAAACAATCTGGTTATGG-AGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTT
EST: gi|86025684|gb|DR321437.1|DR321437
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025738|gb|DR321491.1|DR321491
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTC
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTC
EST: gi|86025636|gb|DR321389.1|DR321389
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAS
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025736|gb|DR321489.1|DR321489
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAT                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025721|gb|DR321474.1|DR321474
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025640|gb|DR321393.1|DR321393
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAA
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAA
EST: gi|86025647|gb|DR321400.1|DR321400
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025638|gb|DR321391.1|DR321391
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025642|gb|DR321395.1|DR321395
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAS
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025725|gb|DR321478.1|DR321478
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025667|gb|DR321420.1|DR321420
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|124900199|gb|EH974817.1|EH974817
EST:     TTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: TTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025744|gb|DR321497.1|DR321497
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025722|gb|DR321475.1|DR321475
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025654|gb|DR321407.1|DR321407
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025669|gb|DR321422.1|DR321422
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025709|gb|DR321462.1|DR321462
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025665|gb|DR321418.1|DR321418
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025737|gb|DR321490.1|DR321490
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|124729221|gb|EH820623.1|EH820623
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGAT
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGAT
EST: gi|86025655|gb|DR321408.1|DR321408
EST:     GTAAMCAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025735|gb|DR321488.1|DR321488
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025707|gb|DR321460.1|DR321460
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025648|gb|DR321401.1|DR321401
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAS
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025716|gb|DR321469.1|DR321469
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025650|gb|DR321403.1|DR321403
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|164014537|gb|ES063913.1|ES063913
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTC
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTC
EST: gi|86025685|gb|DR321438.1|DR321438
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025692|gb|DR321445.1|DR321445
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025639|gb|DR321392.1|DR321392
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCATGAGGCTTCAATGCCAAAGCTGCAA
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGC-TGAGGCTTCAATGCCAAAGCTGCAA
EST: gi|86025727|gb|DR321480.1|DR321480
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025656|gb|DR321409.1|DR321409
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025683|gb|DR321436.1|DR321436
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025717|gb|DR321470.1|DR321470
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025678|gb|DR321431.1|DR321431
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025679|gb|DR321432.1|DR321432
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025745|gb|DR321498.1|DR321498
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAS
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025746|gb|DR321499.1|DR321499
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025677|gb|DR321430.1|DR321430
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|125082732|gb|EL143539.1|EL143539
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATG
EST: gi|164214794|gb|ES107903.1|ES107903
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAAC
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAAC
EST: gi|86025696|gb|DR321449.1|DR321449
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025674|gb|DR321427.1|DR321427
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025714|gb|DR321467.1|DR321467
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|164143618|gb|ES024219.1|ES024219
EST:     GGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025702|gb|DR321455.1|DR321455
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025723|gb|DR321476.1|DR321476
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAS
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025668|gb|DR321421.1|DR321421
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGASAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAS
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025713|gb|DR321466.1|DR321466
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025740|gb|DR321493.1|DR321493
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
EST: gi|86025743|gb|DR321496.1|DR321496
EST:     GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAG                         GCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG
genomic: GTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgc ... tttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgcttttccttgtcttgatctctaattactgtcttctatgtgagaaccaatttaggatttcagaattgactctgtgaaatatgtcttataggaatgatttgttaattggaccttgctcattatttgtctttctttggaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG