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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGTTGTTATTAGAGCTCGGAATCTTAAAGTCGGTGCTAATTTTATCCCGCCGAAATCATTCCGTGCTCGGAGATTCTACTTCAGCAACGAGgtaatgagttttctaagatttgacatttggtcttgatctggttttctgattttaagagattcattgtgtggattccattgaaagcttgagtttgttgttg...

Basic information

species Arabidopsis thaliana
transcript AT4G12590.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125081791|gb|EL142880.1|EL142880
EST:     CGGAGATTCTACTTCAGCAACGAG                         GAGAATGGTTTGCTACATGTTCCCAAGGGAGAAGCTCAAAATCCACAAGCT
genomic: CGGAGATTCTACTTCAGCAACGAGgtaatgagtt ... tttgttgtagGAGAATGGTTTGCTACATGTTCCCAAGGGAGAAGCTCAAAATCCACAAGCT
EST: gi|124904414|gb|EH978494.1|EH978494
EST:     TTATCCCGCCGAAATCATTCCGTGCTCGGAGATTCTACTTCAGCAACGAG                         GAGAATGGTTT
genomic: TTATCCCGCCGAAATCATTCCGTGCTCGGAGATTCTACTTCAGCAACGAGgtaatgagtt ... tttgttgtagGAGAATGGTTT
EST: gi|124964219|gb|EL038501.1|EL038501
EST:     TTATCCCGCCGAAATCATTCCGTGCTCGGAGATTCTACTTCAGCAACGAG                         GAGAATGGTTTGCTACATGTTCCCAAGGGAGAAGCTCAAAAT
genomic: TTATCCCGCCGAAATCATTCCGTGCTCGGAGATTCTACTTCAGCAACGAGgtaatgagtt ... tttgttgtagGAGAATGGTTTGCTACATGTTCCCAAGGGAGAAGCTCAAAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAAGTTGTTATTAGAGCTCGGAATCTTAAAGTCGGTGCTAATTTTATCCCGCCGAAATCATTCCGTGCTCGGAGATTCTACTTCAGCAACGAGgtaatgagttttctaagatttgacatttggtcttgatctggttttctgattttaagagattcattgtgtggattccattgaaagcttgagtttgttgttg

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