1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GATTGATTCATCTCTGTTTAGGAATTGGCTAAGGAATTTGGAATCAGAGAGTGGAATTTTAGCTGATGGTTCAATGACATTAAAGCAAGTTCTTATCCAGgtatatatatataaaagcacattgagatactcttgatcctaatgaattatctgatgatgattatgatcagtgatcagaacatatatagaatcttggagctttcttgattagtttatgatttttag
species | Arabidopsis thaliana |
transcript | AT4G11980.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGGAATTTTAGCTGATGGTTCAATGACATTAAAGCAAGTTCTTATCCAG GGAGTTGATATGTTTGGCAAAAGAATTGGATTTCTCAAATTCAAAGCGGATEST: gi|86055095|gb|DR350852.1|DR350852
genomic: GTGGAATTTTAGCTGATGGTTCAATGACATTAAAGCAAGTTCTTATCCAGgtatatatat ... tgatttttagGGAGTTGATATGTTTGGCAAAAGAATTGGATTTCTCAAATTCAAAGCGGAT
EST: GTGGAATTTTAGCTGATGGTTCAATGACATTAAAGCAAGTTCTTATCCAG GGAGTTGATATGTTTGGCAAAAGAATTGGATTTCTCAAATTCAAAGCGGATEST: gi|86055094|gb|DR350851.1|DR350851
genomic: GTGGAATTTTAGCTGATGGTTCAATGACATTAAAGCAAGTTCTTATCCAGgtatatatat ... tgatttttagGGAGTTGATATGTTTGGCAAAAGAATTGGATTTCTCAAATTCAAAGCGGAT
EST: GTGGAATTTTAGCTGATGGTTCAATGACATTAAAGCAAGTTCTTATCCNG GGAGTTGATATGTTTGGCAAAAGAATTGGATTTCTCAAATTCANAGCGGAT
genomic: GTGGAATTTTAGCTGATGGTTCAATGACATTAAAGCAAGTTCTTATCCAGgtatatatat ... tgatttttagGGAGTTGATATGTTTGGCAAAAGAATTGGATTTCTCAAATTCAAAGCGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTGATTCATCTCTGTTTAGGAATTGGCTAAGGAATTTGGAATCAGAGAGTGGAATTTTAGCTGATGGTTCAATGACATTAAAGCAAGTTCTTATCCAGgtatatatatataaaagcacattgagatactcttgatcctaatgaattatctgatgatgattatgatcagtgatcagaacatatatagaatcttggagctttcttgattagtttatgatttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG