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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGTCCATGTATGCATGCTTGCTCGGATTCTTCTACTTCTTTTCTTCCCCATTTATCCAGAAGACTATCAGACCAAATTATTCAAACTTCAGTCGGTGgtaagcaaccgttacttccatcttctgaaaatatctaatattgatttcactctataaaatttcctaattctttgttttggtgtag

Basic information

species Arabidopsis thaliana
transcript AT4G11800.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G11800.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G018356_T01 (Zea mays), 5'ss of exon 1
GGTGGTCCATGTATGCATGCTTGCTCGGATTCTTCTACTTCTTTTCTTCCCCATTTATCCAGAAGACTATCAGACCAAATTATTCAAACTTCAGTCGGTGgtaagcaaccgttacttccatcttctgaaaatatctaatattgatttcactctataaaatttcctaattctttgttttggtgtag
|||||||||||||||| || ||| | || |||||||| ||||| || || || ||||||  |||||| |||| |||||| ||||| ||||||| ||| |||||| ||      || |      |     ||||   ||  |  ||  ||   |||   |||  || |  || | |     || ||
GGTGGTCCATGTATGCTTGTTTGATTGGCTTCTTCTATTTCTTCTCATCGCCTTTTATCAGGAAGACCATCAAACCAAACTATTCGAACTTCAATCGATGgtaatcattaaccaccttttatgtgaactaatactcaagtt--ataacaaaatatttgattctctgaagctgtttccaaatgcag

upper sequence: AT4G11800.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 2
GGTGGTCCATGTATGCATGCTTGCTCGGATTCTTCTACTTCTTTTCTTCCCCATTTATCCAGAAGACTATCAGACCAAATTATTCAAACTTCAGTCGGTGgtaagcaaccgttacttccatcttctgaaaatatctaatattgatttcactctataaa-atttcctaattctttgttttggtgtag-------------------------------------------------
||||||| |||||||| || ||||| || |||||||| |||||||| || ||||||||   |||||| || |  || | ||||||||| || ||||||||||||| |       ||    | ||         | |  | ||  | |  ||| |     | |     |||  |  ||    |  ||                                                 
GGTGGTCAATGTATGCCTGTTTGCTTGGTTTCTTCTATTTCTTTTCATCTCCATTTATAGGGAAGACAATTAAGCCGAGTTATTCAAATTTTAGTCGGTGgtaagtattttgctctcatgtatttcttttgcttgtgtttttattgtacctccacgtgtactcatctatttctaattacaatacaggaaattactcacattgagctaattgtcttggttaacctttttttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116416374|gb|EG458966.1|EG458966
EST:     CCATTTATCCAGAAGACTATCGGACCAAATTATTCAAACTTCAGTCGGTG                         GTACATTGCCTGGATTTTAGTTGCAGCTTTGTATCATCTTCCTAATTTTCA
genomic: CCATTTATCCAGAAGACTATCAGACCAAATTATTCAAACTTCAGTCGGTGgtaagcaacc ... tttggtgtagGTACATTGCCTGGATTTTAGTTGCAGCTTTGTATCATCTTCCTAATTTTCA