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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGCGATAAAGAAGATAGGTAAAGCCTTTGATAATAAAGTAGATGCAAAGAGAACATTGAGAGAGATTAAGCTACTTCGTCATTTAGAACACGAGAACgtaagttttgtactctattttcgcggtaaacgattagagtttctagctaatgtggtcttgacttgtacag

Basic information

species Arabidopsis thaliana
transcript AT4G11330.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G11330.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA05G37480.1 (Glycine max), 5'ss of exon 2
GATTGCGATAAAGAAGATAGGTAAAGCCTTTGATAATAAAGTAGATGCAAAGAGAACATTGAGAGAGATTAAGCTACTTCGTCATTTAGAACACGAGAACgtaagt-tttgtactctattttcgcggtaaacgat--tagagtttctagct--aatgtggtcttgacttgtacag-------------------------
  |||| || |||||||| ||||| || ||||| |||| | | ||||| ||||||||||||||||| || ||||| ||||||||  | || || |  || ||||||  |  | || | |   |  |  ||  ||    |  ||||  |  |  ||| |  || |       |                            
AGTTGCAATCAAGAAGATCGGTAACGCATTTGACAATATAATTGATGCTAAGAGAACATTGAGAGAAATCAAGCTCCTTCGTCACATGGACCATGGAAATgtaagtgctctttctatgtacccctgcaaagtgaggacatggttttcaaatataatattttcctagtaatcatgatgcaattgtttttataaattcatat

upper sequence: AT4G11330.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G02060.1 (Glycine max), 5'ss of exon 2
GATTGCGATAAAGAAGATAGGTAAAGCCTTTGATAATAAAGTAGATGCAAAGAGAACATTGAGAGAGATTAAGCTACTTCGTCATTTAGAACACGAGAACgtaagttttgtactctat-tttcgcggtaaac----gattagagtttctagctaatgtggtcttgacttgtacag-------------------------
  |||| || |||||||| || || || ||||| |||| | | ||||| ||||||||||||||||| || ||||| ||||||||  | || || || || ||||||  |   |||||| |  | | | |||     ||   |  |||  |  || | |  | ||  |      |                          
AGTTGCAATCAAGAAGATCGGCAACGCATTTGACAATATAATTGATGCTAAGAGAACATTGAGAGAAATCAAGCTCCTTCGTCACATGGACCATGATAATgtaagtgctcacctctatgtacccctgcaaagtgaggacatggtttttcaaatagtataatattttccaagtaatcatgatgcaattgtttttataaatt