1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGTTTGGCTCAGCGTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATATTGACCAACAGgttttaaaaagtttccacctttcttcaattgttcattctcagcctttagtgtataatcacttattagtaatcttattcttgggtttaag
species | Arabidopsis thaliana |
transcript | AT4G10610.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATATTGACCAACAG GTCACTGAGGAGCANNNNNGCTGGTTTGTTTATCGGCTTTGGACAGEST: gi|86046052|gb|DR341807.1|DR341807
genomic: GTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATATTGACCAACAGgttttaaaaa ... tgggtttaagGTCACTGAGGAGCAGCTT-GCTGGTTTGTTTATCGGCTTTGGACAG
EST: GTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATATTGACCAACAG GTCACTGAGGAGCAGCTTTGCTGGTTTGTTTATCGGCTTTTGGACAGEST: gi|86046043|gb|DR341798.1|DR341798
genomic: GTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATATTGACCAACAGgttttaaaaa ... tgggtttaagGTCACTGAGGAGCAGCTT-GCTGGTTTGTTTATCGGCTTT-GGACAG
EST: GTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATATTGACCAACAG GTCACTGAGGAGCAGCTTGCTGGTTTGTTTATCGGCTTTGGACAGEST: gi|86046079|gb|DR341834.1|DR341834
genomic: GTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATATTGACCAACAGgttttaaaaa ... tgggtttaagGTCACTGAGGAGCAGCTTGCTGGTTTGTTTATCGGCTTTGGACAG
EST: GTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATATTGACCAACAG GTCACTGAGGAGCAGCTTGCTGGTTTGTTTATCGGCTTTGGACAGEST: gi|86046053|gb|DR341808.1|DR341808
genomic: GTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATATTGACCAACAGgttttaaaaa ... tgggtttaagGTCACTGAGGAGCAGCTTGCTGGTTTGTTTATCGGCTTTGGACAG
EST: GTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATATTGACCAACAG GTCACTGAGGAGCAGCTTGCTGGTTTGTTTATCGGCTTTGGACAGGTTEST: gi|116466690|gb|EG509282.1|EG509282
genomic: GTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATATTGACCAACAGgttttaaaaa ... tgggtttaagGTCACTGAGGAGCAGCTTGCTGGTTTGTTTATCGGCTTTGGACAGGTT
EST: GTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATATTGACCAACAG GTCACTGAGGAGCAGCTTGCTGGTTTGTTTATCGGCTTTGGACAGEST: gi|86046059|gb|DR341814.1|DR341814
genomic: GTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATATTGACCAACAGgttttaaaaa ... tgggtttaagGTCACTGAGGAGCAGCTTGCTGGTTTGTTTATCGGCTTTGGACAG
EST: GTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATATTGACCAACAG GTCACTGAGGAGCAGCTTGCTGGTTTGTTTATCGGCTTTGGACAGEST: gi|116466689|gb|EG509281.1|EG509281
genomic: GTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATATTGACCAACAGgttttaaaaa ... tgggtttaagGTCACTGAGGAGCAGCTTGCTGGTTTGTTTATCGGCTTTGGACAG
EST: GTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATATTGACCAACAG GTCACTGAGGAGCAGCTTGCTGGTTTGTTTATCGGCTTTGGACAGEST: gi|116412046|gb|EG454638.1|EG454638
genomic: GTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATATTGACCAACAGgttttaaaaa ... tgggtttaagGTCACTGAGGAGCAGCTTGCTGGTTTGTTTATCGGCTTTGGACAG
EST: GTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATATTGACCAACAG GTCACTGAGGAGCAGCTTGCTGGTTTGTTTATCGGCTTTGGACAGEST: gi|86046041|gb|DR341796.1|DR341796
genomic: GTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATATTGACCAACAGgttttaaaaa ... tgggtttaagGTCACTGAGGAGCAGCTTGCTGGTTTGTTTATCGGCTTTGGACAG
EST: GTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATATTGACCAACAG GTCACTTGAGGAGCAGCTTGCTGG
genomic: GTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATATTGACCAACAGgttttaaaaa ... tgggtttaagGTCACT-GAGGAGCAGCTTGCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGTTTGGCTCAGCGTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATATTGACCAACAGgttttaaaaagtttccacctttcttcaattgttcattctcagcctttagtgtataatcacttattagtaatcttattcttgggtttaag
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC