1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ACATGGAACTCGTAAAGTGAAAGGAGCATCTGTACGTATGGCATTAGTTGAGGAGAGACAATCAACGAGCAAAGATGTTGCTGAGCCTCCTCGGGTCCTGgtacataaagtttgagacttgaacacattttgatgtgaattcatggactttgatgattgattatatcttgtgccattgttttgcag
species | Arabidopsis thaliana |
transcript | AT4G10030.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGGAGAGACAATCAACGAGCAAAGATGTTGCTGAGCCTCCTCGGGTCCTG GCGTATGATCTTGTTCAAGGAGCACTTEST: gi|86019779|gb|DR315525.1|DR315525
genomic: AGGAGAGACAATCAACGAGCAAAGATGTTGCTGAGCCTCCTCGGGTCCTGgtacataaag ... tgttttgcagGCGTATGATCTTGTTCAAGGAGCACTT
EST: AGGAGAGACAATCAACGAGCAAAGATGTTGCTGAGCCTCCTCGGGTCCTG GCGTATGATCTTGTTCAAGGAGCACTTEST: gi|86019777|gb|DR315523.1|DR315523
genomic: AGGAGAGACAATCAACGAGCAAAGATGTTGCTGAGCCTCCTCGGGTCCTGgtacataaag ... tgttttgcagGCGTATGATCTTGTTCAAGGAGCACTT
EST: AGGAGAGACAATCAACGAGCAAAGATGTTGCTGAGCCTCCTCGGGTCCTG GCGTATGATCTTGTTCAAGGAGCACTT
genomic: AGGAGAGACAATCAACGAGCAAAGATGTTGCTGAGCCTCCTCGGGTCCTGgtacataaag ... tgttttgcagGCGTATGATCTTGTTCAAGGAGCACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATGGAACTCGTAAAGTGAAAGGAGCATCTGTACGTATGGCATTAGTTGAGGAGAGACAATCAACGAGCAAAGATGTTGCTGAGCCTCCTCGGGTCCTGgtacataaagtttgagacttgaacacattttgatgtgaattcatggactttgatgattgattatatcttgtgccattgttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC