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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGACATTACCATTGGTACTCCTCCTCAGAAGTTCACTGTGATCTTTGATACTGGTAGCTCCAATCTCTGGATACCATCTACTAAATGTTACCTATCGgtacgcgttagtttgttcttaatgcataataattctgaaaatcctattgtattcttactcccaaaagaacaaaacaaaatatctatgtttaatgttttttcag

Basic information

species Arabidopsis thaliana
transcript AT4G04460.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G04460.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA09G00810.1 (Glycine max), 5'ss of exon 1
TGGTGACATTACCATTGGTACTCCTCCTCAGAAGTTCACTGTGATCTTTGATACTGGTAGCTCCAATCTCTGGATACCATCTACTAAATGTTACCTATCGgtacgcgttagtttgttcttaatgcataataattctgaaaatcctattgtattcttactcccaaaagaacaaaacaaaatatc-tatgtttaatgttttttcag
|||||| ||  |||||||||| ||||||||||||||||||||||| ||||| || |||||||| ||| | ||| | || ||  | ||||||||| | |||||  |  ||  ||| |  || ||  ||||   |  |   ||| |  || | || |||  ||  |       ||       ||  | | ||  |||||  | |||
TGGTGAAATAGCCATTGGTACCCCTCCTCAGAAGTTCACTGTGATTTTTGACACCGGTAGCTCTAATTTGTGGGTGCCGTCATCCAAATGTTACTTCTCGgtgag-attgctttttaattcata-ataaccgtcttatcaatgcgtttatttttttatccctcagtttggtaacttgttcatggtgttttgcatgttggtgcag

upper sequence: AT4G04460.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA15G11670.1 (Glycine max), 5'ss of exon 1
TGGTGACATTACCATTGGTACTCCTCCTCAGAAGTTCACTGTGATCTTTGATACTGGTAGCTCCAATCTCTGGATACCATCTACTAAATGTTACCTATCGgtacg--cgttagtttgttcttaat-gcataataattctgaaaatcctattgtattcttactc--ccaaaagaacaaaacaaaatatctatgtttaatgttttttcag
 ||||| ||  |||||||||| ||||||||||||||||||||||| ||||| || |||||||| ||| | ||| | |||||  | ||||||||| | |||||  |   | |  |   ||| |||  |  |||| | |  |   |   | || | ||| | |||         |      ||   | | | ||    |||||  | |||
CGGTGAAATAGCCATTGGTACCCCTCCTCAGAAGTTCACTGTGATTTTTGACACCGGTAGCTCTAATTTGTGGGTGCCATCATCCAAATGTTACTTCTCGgtgagattgcttttcaattcataaccgtctaatcaatgcgtgtaggttctttttttcctcctcattttggcaacttgttcatggtgtttttgc---atgttggtgcag

upper sequence: AT4G04460.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 2
TGGTGACATTACCATTGGTACTCCTCCTCAGAAGTTCACTGTGATCTTTGATACTGGTAGCTCCAATCTCTGGATACCATCTACTAAATGTTACCTATCGgtacgcgttagtttgttcttaatgcataataattctgaaaatcctattgtattcttactcccaaa------agaacaaaacaaaatatc-tatgtttaatgttttttcag----------
|||||| |||   ||||||||||| ||||| | ||||||||| |||||||| ||||||||||| || || ||| | |||||  | || || ||  | |||||  || |   | | |   |      | | |||     |      ||| | || |   |  |||        |||  ||   ||  ||| | ||||| |  |||| |||           
TGGTGAAATTGGTATTGGTACTCCCCCTCAAACGTTCACTGTAATCTTTGACACTGGTAGCTCAAACCTGTGGGTTCCATCATCCAAGTGCTATTTCTCGgtgagcttccatatttctgtggaatgtgacaatatgttagtgaacatttttttttccatttcaagttggttggaagcaagagaatcatcatgtgtttga-attttgtcattttggtgcag

upper sequence: AT4G04460.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: EFJ36863 (Selaginella moellendorffii), 5'ss of exon 1
TGGTGACATTACCATTGGTACTCCTCCTCAGAAGTTCACTGTGATCTTTGATACTGGTAGCTCCAATCTCTGGATACCATCTACTAAATGTTACCTATCGgtacgcgttagtttgttcttaatgcataataattctgaaaatcctattgtattcttactcccaaaagaacaaaacaaaatatctatgtttaatgttttttcag
 || || ||   |||||| |  || || ||| ||||||||||||| ||||| ||||||||||| ||||||||| | |||||    ||||||   || |||||| |  ||     |   |  |  | |  |  |||    | || |   |                                                      
CGGCGAGATCGGCATTGGGAGCCCGCCGCAGGAGTTCACTGTGATTTTTGACACTGGTAGCTCGAATCTCTGGGTTCCATCGGGAAAATGTGTTCTGTCGgtaagtatttccaggaattccacacgt--tttttcatggattcttgcag------------------------------------------------------

upper sequence: AT4G04460.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: EFJ27796 (Selaginella moellendorffii), 5'ss of exon 1
TGGTGACATTACCATTGGTACTCCTCCTCAGAAGTTCACTGTGATCTTTGATACTGGTAGCTCCAATCTCTGGATACCATCTACTAAATGTTACCTATCGgtacgcgttagtttgttcttaatgcataataattctgaaaatcctattgtattcttactcccaaaagaacaaaacaaaatatctatgtttaatgttttttcag
 || || ||   |||||| |  || || ||| ||||||||||||| ||||| ||||||||||| ||||||||| | |||||    ||||||   || |||||| |  ||       |   |   ||   |  |||    | || |   |                                                      
CGGCGAGATCGGCATTGGGAGCCCGCCGCAGGAGTTCACTGTGATTTTTGACACTGGTAGCTCGAATCTCTGGGTTCCATCGGGAAAATGTGTTCTGTCGgtaagtattccaggaattcca---cacgttttttcatggattcttgcag------------------------------------------------------