1 5' 3' | 2 5' 3' | 3 5' 3' |
GTTTTTGATGAAATTGAACAACGAAACAGTTTCAATCGAGCTTAAGAACGGAACCATTGTTCATGGAACCATTACTGgtacgcttctcttaaaaacccagctctattcgctgtttagggttttgtgtaaaatctacgatgcttacctgtaatcgatggttactcgcgtattcacaaa...
species | Arabidopsis thaliana |
transcript | AT4G02840.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCGAGCTTAAGAACGGAACCATTGTTCATGGAACCATTACTG GTGTAGATGTTAGCATGAACACTCATTTAAAAGCTGTGAAACTCACTTTGAEST: gi|164062250|gb|ES072763.1|ES072763
genomic: TCGAGCTTAAGAACGGAACCATTGTTCATGGAACCATTACTGgtacgcttct ... cttaatgcagGTGTAGATGTTAGCATGAACACTCATTTAAAAGCTGTGAAACTCACTCTGA
EST: GCTTAAGAACGGAACCATTGTTCATGGAACCATTACTG GTGTAGATGTTAGCATGAACACTCATTTAAAAGCTGTGAAACTCACTTTGAEST: gi|125118423|gb|EL167152.1|EL167152
genomic: GCTTAAGAACGGAACCATTGTTCATGGAACCATTACTGgtacgcttct ... cttaatgcagGTGTAGATGTTAGCATGAACACTCATTTAAAAGCTGTGAAACTCACTCTGA
EST: AGTTTCAATCGAGCTTAAGAACGGAACCATTGTTCATGGAACCATTACTG GTGTAGATGTTAGCATEST: gi|152034269|gb|BP823720.2|BP823720
genomic: AGTTTCAATCGAGCTTAAGAACGGAACCATTGTTCATGGAACCATTACTGgtacgcttct ... cttaatgcagGTGTAGATGTTAGCAT
EST: AGTTTCAATCGAGCTTAAGAACGGAACCATTGATCATGGAACCATTACTG GTGTAGATGTTAGCATGAACACTCATTTAAAAGCTGTGAAACTCACTCTGAEST: gi|164217352|gb|ES063004.1|ES063004
genomic: AGTTTCAATCGAGCTTAAGAACGGAACCATTGTTCATGGAACCATTACTGgtacgcttct ... cttaatgcagGTGTAGATGTTAGCATGAACACTCATTTAAAAGCTGTGAAACTCACTCTGA
EST: CAATCGAGCTTAAGAACGGAACCATTGTTCATGGAACCATTACTG GTGTAGATGTTAGCATGAACACTCATTTAAAAGCTGTGAAACTCACTTTGAEST: gi|116418470|gb|EG461062.1|EG461062
genomic: CAATCGAGCTTAAGAACGGAACCATTGTTCATGGAACCATTACTGgtacgcttct ... cttaatgcagGTGTAGATGTTAGCATGAACACTCATTTAAAAGCTGTGAAACTCACTCTGA
EST: GCTTAAGAACGGAACCATTGTTCATGGAACCATTACTG GTGTAGATGTTAGCATGAACACTCATTTAAAAGCTGTGAAACTCACTCTGAEST: gi|19877683|gb|AU238514.1|AU238514
genomic: GCTTAAGAACGGAACCATTGTTCATGGAACCATTACTGgtacgcttct ... cttaatgcagGTGTAGATGTTAGCATGAACACTCATTTAAAAGCTGTGAAACTCACTCTGA
EST: AGTTTCAATCGAGCTTAAGAACGGAACCATTGTTCATGGAACCATTACTG GTGTAGATGTTAGCATGAACACTCATTTAAAAGCTGTGAAACTCACTCTGAEST: gi|86076061|gb|DR371818.1|DR371818
genomic: AGTTTCAATCGAGCTTAAGAACGGAACCATTGTTCATGGAACCATTACTGgtacgcttct ... cttaatgcagGTGTAGATGTTAGCATGAACACTCATTTAAAAGCTGTGAAACTCACTCTGA
EST: AGTTTCAATCGAGCTTAAGAACGGAACCATTGTTCATGGAACCATTACTG GTGTAGATGTTAGCATGAACACTCATTTAAAAGCTGTGAAACTCACTCTGA
genomic: AGTTTCAATCGAGCTTAAGAACGGAACCATTGTTCATGGAACCATTACTGgtacgcttct ... cttaatgcagGTGTAGATGTTAGCATGAACACTCATTTAAAAGCTGTGAAACTCACTCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTTGATGAAATTGAACAACGAAACAGTTTCAATCGAGCTTAAGAACGGAACCATTGTTCATGGAACCATTACTGgtacgcttctcttaaaaacccagctctattcgctgtttagggttttgtgtaaaatctacgatgcttacctgtaatcgatggttactcgcgtattcacaaa
- - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaccca