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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGAAAGATTGGCTCTTGGATTGTGTGAAATGCGTGGAGCTGCTCTTAAAGTTGGCCAAATGTTGAGTATACAGGACGAGAGTCTCGTTCCTGCTCCGgtatataccaatcttgctcaactagtgttctctgtttggttggttttgacatgaagataggttcttttgtag

Basic information

species Arabidopsis thaliana
transcript AT4G01660.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G01660.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA10G27970.1 (Glycine max), 5'ss of exon 3
TGCTGAAAGATTGGCTCTTGGATTGTGTGAAATGCGTGGAGCTGCTCTTAAAGTTGGCCAAATGTTGAGTATACAGGACGAGAGTCTCGTTCCTGCTCCGgtatataccaatcttgctcaactagtgttctctgtttggt----tggttttgacatgaagataggttcttttgtag-------------------------
||| ||| | ||||||||||   | ||   |||||||||||| || || ||| |||| || |||||||| |||||||| ||   ||| |||||||||||||||  |    || |   | |     ||  |  |  |||||       |    ||   ||  |  | |  | | |||                         
TGCCGAACGTTTGGCTCTTGCGCTATGCAGAATGCGTGGAGCGGCGCTCAAAATTGGGCAGATGTTGAGCATACAGGATGAATCTCTTGTTCCTGCTCCGgtaattggacatgtcttttatgct-tgcaccttaattggtatcaaaatagctactctaaagtgtgattgtctctagagtgataagtaacggtgtttttatg

upper sequence: AT4G01660.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G00920.1 (Glycine max), 5'ss of exon 2
TGCTGAAAGATTGGCTCTTGGATTGTGTGAAATGCGTGGAGCTGCTCTTAAAGTTGGCCAAATGTTGAGTATACAGGACGAGAGTCTCGTTCCTGCTCCGgtatataccaatcttgctcaactagtgttctctgtttggttggttttgacatg--------aagataggttcttttgtag-------------------------
||| ||| | |||||||||| | | |||  |||||||||||| || |||||| |||| || |||||||| ||||| || ||   ||| ||||||||||||||| |||  |  | ||     ||  |  |  | | ||  ||||| |  | |||        ||  | || |  | | |||                         
TGCCGAACGTTTGGCTCTTGCACTATGTAGAATGCGTGGAGCAGCACTTAAAATTGGGCAGATGTTGAGCATACAAGATGAATCTCTTGTTCCTGCTCCGgta-atatga--catgtct--cttattcttgcagcttaattggtatcaaaatggctcctctaaagtgggattgtctctagagtgattagtaagggtgtgtttatg

upper sequence: AT4G01660.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv07s0005g02430.t01 (Vitis vinifera), 5'ss of exon 2
TGCTGAAAGATTGGCTCTTGGATTGTGTGAAATGCGTGGAGCTGCTCTTAAAGTTGGCCAAATGTTGAGTATACAGGACGAGAGTCTCGTTCCTGCTCCGgtatataccaatcttgctcaac----tagtgttctctgt--ttggttggttttgacatgaagataggttcttttgtag----------------------
||| ||| | |||||||||||  |||||  |||||||||||| ||||||||  | || || |||||||| ||||||||||||| ||| || ||||||||||||| |      |||  |  |     |||  || ||  |  ||||    | || |  || | |||  ||||     |                       
TGCAGAACGTTTGGCTCTTGGTCTGTGTAGAATGCGTGGAGCGGCTCTTAAGTTAGGGCAGATGTTGAGCATACAGGACGAGACTCTTGTACCTGCTCCGgtattttatttccttattatatgcattagaattttcattcattggggaatgttcatttgcacataatttctgagaaataattccatagcctctgagattt