1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAATTACATACACGAGGAAGTTTCTTATATCCTTGAGCGAGAAAGACGTTTGCAAGAAGCTGCCAAATCTGCCTGGTGAATTTGATGAAGCACTGTTGCTgtgagactctatccgatagttttttttttagtttggatttctagaaactgtgtaaatgtgtttgatcatgttggagtgacatgtcttgatttgtacactctttatttgagtag
species | Arabidopsis thaliana |
transcript | AT4G01290.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGCAAGAAGCTGCCAAATCTGCCTGGTGAATTTGATGAAGCACTGTTGCT TGACTTCGAAGATCCTTCACCCGAGCGAGCAAGAATTTCAGGCGATTTTTCEST: gi|116457015|gb|EG499607.1|EG499607
genomic: TGCAAGAAGCTGCCAAATCTGCCTGGTGAATTTGATGAAGCACTGTTGCTgtgagactct ... atttgagtagTGACTTCGAAGATCCTTCACCCGAGCGAGCAAGAATTTCAGGCGATTTTTC
EST: TGCAAGAAGCTGCCAAATCTGCCTGGTGAATTTGATGAAGCACTGTTGCT TGACTTCGAAGATCCTTCACCCGAGCGAGCAAGAATTTCAGGCGATTTTTC
genomic: TGCAAGAAGCTGCCAAATCTGCCTGGTGAATTTGATGAAGCACTGTTGCTgtgagactct ... atttgagtagTGACTTCGAAGATCCTTCACCCGAGCGAGCAAGAATTTCAGGCGATTTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATTACATACACGAGGAAGTTTCTTATATCCTTGAGCGAGAAAGACGTTTGCAAGAAGCTGCCAAATCTGCCTGGTGAATTTGATGAAGCACTGTTGCTgtgagactctatccgatagttttttttttagtttggatttctagaaactgtgtaaatgtgtttgatcatgttggagtgacatgtcttgatttgtacactctttatttgagtag
- - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC