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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACATTCCAAGGCTTCAGAGAATTCAACTAGGCACTATGATTATCCAGTGTTAGCTTACATTACTCCATGgttggtttctttggaacatttttagatttgagatattgaaaatatacaaattgttgtcactgagggcagtagggattggattcatatgctaaaaatgctgtgtag

Basic information

species Arabidopsis thaliana
transcript AT4G01040.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164185011|gb|ES099023.1|ES099023
EST:     TTCAACTAGGCACTATGATTATCCAGTGTTAAAGCTTACATTACTCCATG                         GAACTCTAAAGGC
genomic: TTCAACTAGGCACTATGATTATCCAGTGTTA--GCTTACATTACTCCATGgttggtttct ... tgctgtgtagGAACTCTAAAGGC
EST: gi|124743859|gb|EH835021.1|EH835021
EST:     ACTAGGCACTATGATTATCCAGTGTTAGCTTACATTACTCCATG                         GAACTCTAAAGGCTATGATATGGCAAAGATATTCAACTCAAAGTTTACACA
genomic: ACTAGGCACTATGATTATCCAGTGTTAGCTTACATTACTCCATGgttggtttct ... tgctgtgtagGAACTCTAAAGGCTATGATATGGCAAAGATATTCAACTCAAAGTTTACACA
EST: gi|86057406|gb|DR353163.1|DR353163
EST:     AATTCAACTAGGCACTATGATTATCCAGTGTTAGCTTACATTACTCCATG                         GAACTCTAAAGGCTATGATATGGCAAAGATATTCAACTCAAAGTTTACACA
genomic: AATTCAACTAGGCACTATGATTATCCAGTGTTAGCTTACATTACTCCATGgttggtttct ... tgctgtgtagGAACTCTAAAGGCTATGATATGGCAAAGATATTCAACTCAAAGTTTACACA