1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTCGACAACGAAGGAGTTACCAAATCTTACAAGACGTACTTATACCGCAAGAGAAGATTACGCAGCTGTTGTAATCCAAACTGGTTTCAGAGGCTATTTGgtgagcaaaattctcccttaactacatttgattaattagtaatcaaacaggttttggatttaactttgaattatatag
species | Arabidopsis thaliana |
transcript | AT4G00820.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGAAGATTACGCAGCTGTTGTAATCCAAACTGGTTTCAGAGGCTATTTG GCAAGAAGAGCATTAAGAGCATTGAAAGGGCTAGTGAAGTTACAAGCACTAEST: gi|124828630|gb|EH913466.1|EH913466
genomic: GAGAAGATTACGCAGCTGTTGTAATCCAAACTGGTTTCAGAGGCTATTTGgtgagcaaaa ... aattatatagGCAAGAAGAGCATTAAGAGCATTGAAAGGGCTAGTGAAGTTACAAGCACTA
EST: ACGCAGCTGTTGTAATCCAAACTGGTTTCAGAGGCTATTTG GCAAGAAGAGCATTAAGAGCATTGAAAGGGCTAGTGAAGTTACAAGCACTA
genomic: ACGCAGCTGTTGTAATCCAAACTGGTTTCAGAGGCTATTTGgtgagcaaaa ... aattatatagGCAAGAAGAGCATTAAGAGCATTGAAAGGGCTAGTGAAGTTACAAGCACTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGACAACGAAGGAGTTACCAAATCTTACAAGACGTACTTATACCGCAAGAGAAGATTACGCAGCTGTTGTAATCCAAACTGGTTTCAGAGGCTATTTGgtgagcaaaattctcccttaactacatttgattaattagtaatcaaacaggttttggatttaactttgaattatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT