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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATGGAGGAATTAAGCCAAATCTTGAAGAACAATAGGACCGATGATCTCACTTGGTTTTGCTCTCTCTCAGAATCTGAACTGgtaaatatattgtttaatcattctctttctttctgcagtcaaaaactaacattgatcaatcattttttcag

Basic information

species Arabidopsis thaliana
transcript AT4G00695.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116417756|gb|EG460348.1|EG460348
EST:     ATAGGACCGATGATCTCACTTGGTTTTGCTCTCTCTCAGAATCTGAACTG                         GATTTGCTCATCAGCTTAAAAAAGCTAGTCATTCGACGTGCCAAAGTAAGT
genomic: ATAGGACCGATGATCTCACTTGGTTTTGCTCTCTCTCAGAATCTGAACTGgtaaatatat ... attttttcagGATTTGCTCATCAGCTTAAAAAAGCTAGTCATTCGACGTGCCAAAGTAAGT
EST: gi|116417784|gb|EG460376.1|EG460376
EST:     ATAGGACCGATGATCTCACTTGGTTTTGCTCTCTCTCAGAATCTGAACTG                         GATTTGCTCATCAGCTTAAAAAAGCTAGTCATTCGACGTGCCAAAGTAAGT
genomic: ATAGGACCGATGATCTCACTTGGTTTTGCTCTCTCTCAGAATCTGAACTGgtaaatatat ... attttttcagGATTTGCTCATCAGCTTAAAAAAGCTAGTCATTCGACGTGCCAAAGTAAGT
EST: gi|116417755|gb|EG460347.1|EG460347
EST:     ATAGGACCGATGATCTCACTTGGTTTTGCTCTCTCTCAGAATCTGAACTG                         GATTTGCTCATCAGCTTAAAAAAGCTAGTCATTCGACGTGCCAAAGTAAGT
genomic: ATAGGACCGATGATCTCACTTGGTTTTGCTCTCTCTCAGAATCTGAACTGgtaaatatat ... attttttcagGATTTGCTCATCAGCTTAAAAAAGCTAGTCATTCGACGTGCCAAAGTAAGT
EST: gi|116417773|gb|EG460365.1|EG460365
EST:     ATAGGACCGATGATCTCACTTGGTTTTGCTCTCTCTCAGAATCTGAACTG                         GATTTGCTCATCAGCTTAAAAAAGCTAGTCATTCGACGTGCCAAAGTAAGT
genomic: ATAGGACCGATGATCTCACTTGGTTTTGCTCTCTCTCAGAATCTGAACTGgtaaatatat ... attttttcagGATTTGCTCATCAGCTTAAAAAAGCTAGTCATTCGACGTGCCAAAGTAAGT
EST: gi|116417760|gb|EG460352.1|EG460352
EST:     ATAGGACCGATGATCTCACTTGGTTTTGCTCTCTCTCAGAATCTGAACTG                         GATTTGCTCATCAGCTTAAAAAAGCTAGTCATTCGACGTGCCAGAGTAAGT
genomic: ATAGGACCGATGATCTCACTTGGTTTTGCTCTCTCTCAGAATCTGAACTGgtaaatatat ... attttttcagGATTTGCTCATCAGCTTAAAAAAGCTAGTCATTCGACGTGCCAAAGTAAGT
EST: gi|116417758|gb|EG460350.1|EG460350
EST:     ATAGGACCGATGATCTCACTTGGTTTTGCTCTCTCTCAGAATCTGAACTG                         GATTTGCTCATCAGCTTAAAAAAGCTAGTCATTCGACGTGCCAAAGTAAGT
genomic: ATAGGACCGATGATCTCACTTGGTTTTGCTCTCTCTCAGAATCTGAACTGgtaaatatat ... attttttcagGATTTGCTCATCAGCTTAAAAAAGCTAGTCATTCGACGTGCCAAAGTAAGT
EST: gi|116417774|gb|EG460366.1|EG460366
EST:     ATAGGACCGATGATCTCACTTGGTTTTGCTCTCTCTCAGAATCTGAACTG                         GATTTGCTCATCAGCTTAAAAAAGCTAGTCATTCGACGTGCCAAAGTAAGT
genomic: ATAGGACCGATGATCTCACTTGGTTTTGCTCTCTCTCAGAATCTGAACTGgtaaatatat ... attttttcagGATTTGCTCATCAGCTTAAAAAAGCTAGTCATTCGACGTGCCAAAGTAAGT
EST: gi|116417785|gb|EG460377.1|EG460377
EST:     ATAGGACCGATGATCTCACTTGGTTTTGCTCTCTCTCAGAATCTGAACTG                         GATTTGCTCATCAGCTTAAAAAAGCTAGTCATTCGACGTGCCAAAGTAAGT
genomic: ATAGGACCGATGATCTCACTTGGTTTTGCTCTCTCTCAGAATCTGAACTGgtaaatatat ... attttttcagGATTTGCTCATCAGCTTAAAAAAGCTAGTCATTCGACGTGCCAAAGTAAGT
EST: gi|116417757|gb|EG460349.1|EG460349
EST:     ATAGGACCGATGATCTCACTTGGTTTTGCTCTCTCTCAGAATCTGAACTG                         GATTTGCTCATCAGCTTAAAAAAGCTAGTCATTCGACGTGCCAAAGTAAGT
genomic: ATAGGACCGATGATCTCACTTGGTTTTGCTCTCTCTCAGAATCTGAACTGgtaaatatat ... attttttcagGATTTGCTCATCAGCTTAAAAAAGCTAGTCATTCGACGTGCCAAAGTAAGT