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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGCTTAGATGGGACGCTACCTGGTTATCATCTAGATCGTGGTTTTGGATCAGGTGCTAACAGTTGGCTTATCCAGCTTGAGgtatgtgcattttacagcttatgtagtagtcttggacttttgctagtttaagtatataatggaagtttctgctgctactgaggactgacttagaagttagaagctagatattctttttttaactcaatgagtggtttag

Basic information

species Arabidopsis thaliana
transcript AT3G62060.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G62060.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv07s0005g02440.t01 (Vitis vinifera), 5'ss of exon 14
TGTGCTTAGATGGGACGCTACCTGGTTATCATCTAGATCGTGGTTTTGGATCAGGTGCTAACAGTTGGCTTATCCAGCTTGAGgtatgtgcat----tttacagcttatgtagtagtcttggacttttgctag--------------tttaagtatataatgga----agtttctgctgctactgagga--ctgacttagaagttagaa-gctagatattct----ttttttaactcaa-tgagtggtttag------------------------
| || || ||||| || ||||||||||||||| |  |||  ||||||||||||||||| ||||| ||||| || ||  | ||||| |||  ||    |    || | |   | |  ||||   ||||  ||                ||||  | ||  ||||     |  ||||     | ||||  |  ||   |  ||||  |||| |  | | | |||    || |  | || || |  ||   |                           
TTTGTTTGGATGGAACTCTACCTGGTTATCATTTCCATCCGGGTTTTGGATCAGGTGCCAACAGCTGGCTCATTCAATTGGAGgtgtgtagatgggttcccaagatgaatcaattttctttctctttcactgcattggatccaagcttttagatttaagatgggcaggacattctcacaatcctgaaaattctatatgggaagaaagaaagaaaaaaaatctgaacttctagagctgaagtctgtaactacactgaattgggtttcttgattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876167|gb|AU236998.1|AU236998
EST:     TAGATCGTGGTTTTGGATCAGGTGCTAACAGTTGGCTTATCCAGCTTGAG                         GGTGGAGGATGGTGTAACAACCATAGGAGCTGTGTGTATCGCAAAACAAGT
genomic: TAGATCGTGGTTTTGGATCAGGTGCTAACAGTTGGCTTATCCAGCTTGAGgtatgtgcat ... agtggtttagGGTGGAGGATGGTGTAACAACCATAGGAGCTGTGTGTATCGCAAAACAAGT
EST: gi|86073096|gb|DR368853.1|DR368853
EST:     TAGATCGTGGTTTTGGATCAGGTGCTAACAGTTGGCTTATCCAGCTTGAG                         GGTGGAGGATGGTGTAACAACCATAGGAGCTGTGTGTATCGCAAAACAAGT
genomic: TAGATCGTGGTTTTGGATCAGGTGCTAACAGTTGGCTTATCCAGCTTGAGgtatgtgcat ... agtggtttagGGTGGAGGATGGTGTAACAACCATAGGAGCTGTGTGTATCGCAAAACAAGT