1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TTTGATTTCTGGGATTCTGTTCGGGATTATCTTCGGCGTAGCTCTAATGGCTGGCTGGAGTCGTATGATGACTCACCGATCGTCCAAGCGAGTCGCCAAGgttcgattaaatcaatgtacttattcgattaaaatccatgatttggttctgaaattgattcatcggagatattttaagattttaaatctgggattttaaa...
species | Arabidopsis thaliana |
transcript | AT3G61050.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTGGCTGGAGTCGTATGATGACTCACCGATCGTCCAAGCGAGTCGCCAAG GCAGTTGATATGAAACTACTAGGCTCTCTTAGCAGAGACGATTTEST: gi|116380658|gb|EG423250.1|EG423250
genomic: CTGGCTGGAGTCGTATGATGACTCACCGATCGTCCAAGCGAGTCGCCAAGgttcgattaa ... cttctgacagGCAGTTGATATGAAACTACTAGGCTCTCTTAGCAGAGACGATTT
EST: CTGGCTGGAGTCGTATGATGACTCACCGATCGTCCAAGCGAGTCGCCAAG GCAGTTGATATGAAACTACTAGGCTCTCTTAGCAGAGACGATTTGAAGAAAEST: gi|125253713|gb|EL267798.1|EL267798
genomic: CTGGCTGGAGTCGTATGATGACTCACCGATCGTCCAAGCGAGTCGCCAAGgttcgattaa ... cttctgacagGCAGTTGATATGAAACTACTAGGCTCTCTTAGCAGAGACGATTTGAAGAAA
EST: TGACTCACCGATCGTCCAAGCGAGTCGCCAAG GCAGTTGATATGAAACTACTAGGCTCTCTTAGCAGAGACGATTTGAAGAAAEST: gi|19874467|gb|AU235298.1|AU235298
genomic: TGACTCACCGATCGTCCAAGCGAGTCGCCAAGgttcgattaa ... cttctgacagGCAGTTGATATGAAACTACTAGGCTCTCTTAGCAGAGACGATTTGAAGAAA
EST: CTGGCTGGAGTCGTATGATGACTCACCGATCGTCCAAGCGAGTCGCCAAG GCAGTTGATATGAAACTACTAGGCTCTCTTAGCAGAGACGATTTGAAGAAA
genomic: CTGGCTGGAGTCGTATGATGACTCACCGATCGTCCAAGCGAGTCGCCAAGgttcgattaa ... cttctgacagGCAGTTGATATGAAACTACTAGGCTCTCTTAGCAGAGACGATTTGAAGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGATTTCTGGGATTCTGTTCGGGATTATCTTCGGCGTAGCTCTAATGGCTGGCTGGAGTCGTATGATGACTCACCGATCGTCCAAGCGAGTCGCCAAGgttcgattaaatcaatgtacttattcgattaaaatccatgatttggttctgaaattgattcatcggagatattttaagattttaaatctgggattttaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA