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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCTGACACAACTTATGGTAGTTGCTGTATTGATGAAGTTGGAGCTTTGCATATTGATTCTGAATGTGTTGTTCATTACGGTCAAACATGTCTAAGCCCgtgagtcataaacccttttcttcatctatgtaattgctttaaattcccttgttgaaacaatgtcttattgtgaggttctatgttttcacag

Basic information

species Arabidopsis thaliana
transcript AT3G59630.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G59630.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA15G01090.1 (Glycine max), 5'ss of exon 2
TGGCTGACACAACTTATGGTAGTTGCTGTATTGATGAAGTTGGAGCTTTGCATATTGATTCTGAATGTGTTGTTCATTACGGTCAAACATGTCTAAGCCCgtgagt---cataaacccttttcttcatc-tatgtaattgctttaaattcccttgttgaaacaatgtcttattgtgaggttctatgttttcacag---------------------
|||| |||||  | ||||| |||||||||||||||||||||||||| |  || ||| || |||| |||||  | ||||| ||||| || ||| | || |||| |||     |||| | |||| |  ||| | |  |||| |  |  | |     ||||| |   | | | ||| |    |  |||| ||     |                     
TGGCCGACACGGCCTATGGCAGTTGCTGTATTGATGAAGTTGGAGCATCACACATTAATGCTGATTGTGTCATACATTATGGTCATACTTGTTTTAGTCCgtcagtacttctaaaacattttttatatccttttcaatttcagtttaattaagagttgagattctatttcattatt---tcatatgcttctgttgaatcttcttttctctgtgcag

upper sequence: AT3G59630.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv05s0094g00370.t01 (Vitis vinifera), 5'ss of exon 2
TGGCTGACACAACTTATGGTAGTTGCTGTATTGATGAAGTTGGAGCTTTGCATATTGATTCTGAATGTGTTGTTCATTACGGTCAAACATGTCTAAGCCCgtgagtcataaacccttttcttca--tctatgtaattgctttaaattcccttgttgaaacaatgtcttattgtgaggttctatgttttcacag-------
|||| || ||||| ||||||||||| ||| | ||||| |||||||| | ||||||| || |||| || ||||||||||| || || |||||| | || ||||||||  |   |      ||| |  | | | ||      || |    | || | |      |    | ||||   | || |  | | ||          
TGGCAGATACAACATATGGTAGTTGTTGTGTGGATGAGGTTGGAGCATCGCATATTAATGCTGACTGCGTTGTTCATTATGGACACACATGTTTGAGTCCgtgagtattgttcttcacacttaaaatttttatatcaagctttagaaactttttgggggttttcaagttttgttttgctcaacttatgcattatgtattg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164205398|gb|ES100221.1|ES100221
EST:     CATATTGATTCTGAATGTGTTGTTCATTACGGTCAAACATGTCTAAGCCC                         GACATCAGTTC
genomic: CATATTGATTCTGAATGTGTTGTTCATTACGGTCAAACATGTCTAAGCCCgtgagtcata ... gttttcacagGACATCAGTTC