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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTCAAGAAAGCTTATGAACTCTCTGTCTTGTGTGATGCCGAAGTTGCCCTCGTCATCTTCTCCACTCGTGGCCGTCTCTATGAGTACGCCAACAACAGgtacgcttctcctactctatttcttgatcttgttttcttaattttaactaaacaagatcctagttcaaatgataacaaagtggggattgagagccaagat...

Basic information

species Arabidopsis thaliana
transcript AT3G58780.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G58780.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA18G12590.1 (Glycine max), 5'ss of exon 1
TTCTCAAGAAAGCTTATGAACTCTCTGTCTTGTGTGATGCCGAAGTTGCCCTCGTCATCTTCTCCACTCGTGGCCGTCTCTATGAGTACGCCAACAACAGgtacgcttctcctactctatttcttgatcttgttttcttaatttt-aactaaacaagatcctagttcaaatgataacaaagtggggattgagagccaagat--
| || ||||||||||||||| | || ||  |||||||||| ||||||||||| ||  ||||||| || ||||||||| | |||||||| |||||||||||||    | |    || | |   |||  |    ||||  |||     || |    ||| | || | | || |  |  |    ||    ||       ||  |  
TGCTGAAGAAAGCTTATGAATTATCAGTTCTGTGTGATGCGGAAGTTGCCCTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGgttt--taccaacacacaaacccttctttaaatttttctaacccccaaatcttgaaggttcttgat-aattagtttctccttgattttttgtttataaattat

upper sequence: AT3G58780.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G42300.1 (Glycine max), 5'ss of exon 2
TTCTCAAGAAAGCTTATGAACTCTCTGTCTTGTGTGATGCCGAAGTTGCCCTCGTCATCTTCTCCACTCGTGGCCGTCTCTATGAGTACGCCAACAACAGgtacgcttctcctactctatttcttgatcttgttttcttaattttaactaaacaagatcctagttcaaatgataacaaag--tggggattgagagccaagat
| || || |||||||||||| | || ||  |||||||||| ||||||||||| ||  ||||||| || ||||||||| | |||||||| |||||||||||||    ||  |  ||      |  | |  || |||| |||     || |    ||| |  |   |    |  |         ||   ||| |  || ||   
TGCTGAAAAAAGCTTATGAATTATCAGTTCTGTGTGATGCTGAAGTTGCCCTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGgtttctttaactcacaaacccttcttaaatt-ttttgttacccccaaatcttgaaggtaattaattggtttctctttggttttgtttattaatggctaatg-

upper sequence: AT3G58780.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA14G03100.2 (Glycine max), 5'ss of exon 1
TTCTCAAGAAAGCTTATGAACTCTCTGTCTTGTGTGATGCCGAAGTTGCCCTCGTCATCTTCTCCACTCGTGGCCGTCTCTATGAGTACGCCAACAACAGgtacgc---ttctcctact-ctatttcttgatcttgttttcttaattttaactaaacaagatcctagttcaaatgataacaaagtggggattgagagccaagat-
| |||||||| ||||||||| | |||||  |||||||||| || ||||| || ||  ||||||| |  ||||| || ||||||||||| ||||||||||||| |     ||||  |||| ||| |||   | | |  ||| |  ||  |   |  |    ||   |  ||  ||||  || |  |    |     | |||     
TGCTCAAGAAGGCTTATGAATTGTCTGTTCTGTGTGATGCTGAGGTTGCTCTTGTTGTCTTCTCAAGCCGTGGACGCCTCTATGAGTATGCCAACAACAGgttcaaatattcttttactactaattcaacaccgtactttttctatcct---tcgatctcatttcatatcttatga--accatttaaataacacaaaccatatct

upper sequence: AT3G58780.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G45730.3 (Glycine max), 5'ss of exon 1
TTCTCAAGAAAGCTTATGAACTCTCTGTCTTGTGTGATGCCGAAGTTGCCCTCGTCATCTTCTCCACTCGTGGCCGTCTCTATGAGTACGCCAACAACAGgtacgcttctcctactctatttcttgatcttgttttcttaattttaactaaacaagatcctagttcaaatg--ataacaaagtggggattgagagccaagat
| || ||||| ||||||||| | |||||  |||||||||| || ||||| || ||  ||||||| |  ||||| || ||||||||||| ||||||||||||| |   |    |  | || ||||   ||   |   |  | | ||       |    ||    |   |||    ||| ||  |    ||    |   ||   
TGCTGAAGAAGGCTTATGAATTGTCTGTTCTGTGTGATGCTGAGGTTGCTCTTGTTGTCTTCTCAAGCCGTGGACGCCTCTATGAGTATGCCAACAACAGgttcaaattaattcttttacttctgattcaattcaacacactattcctctctctctctctctctctcaataccttaaaaacctttacataagtatttaaa--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164041619|gb|ES120989.1|ES120989
EST:     GCCAACAACAG                         TGTNAGGGGTACAATTGAAAGGTACAAGAAAGCTTGTTCCGATGCCGTCAA
genomic: GCCAACAACAGgtacgcttct ... tacttattagTGTGAGGGGTACAATTGAAAGGTACAAGAAAGCTTGTTCCGATGCCGTCAA
EST: gi|164030270|gb|ES120114.1|ES120114
EST:     CGTCTCTATGAGTACGCCAACAACAG                         TGTGAGGGGTACAATTGAAAGGTACAAGAAAGCTTGTTCCGATGCCGTCAA
genomic: CGTCTCTATGAGTACGCCAACAACAGgtacgcttct ... tacttattagTGTGAGGGGTACAATTGAAAGGTACAAGAAAGCTTGTTCCGATGCCGTCAA
EST: gi|164219907|gb|ES186995.1|ES186995
EST:     GTACGCCAACAACAG                         TGTNAGGGGTACAATTGAAAGGTACAAGAAAGCTTGTTCCGATGCCGTCAA
genomic: GTACGCCAACAACAGgtacgcttct ... tacttattagTGTGAGGGGTACAATTGAAAGGTACAAGAAAGCTTGTTCCGATGCCGTCAA