Sequence
atgc intronic sequence ATGC exonic sequenceTGGTATCTTAAAAAACGCTATCTACGATTACTTTGATTCCAATTACTCAAACAAGTTTGAGAAGTTCGAAGACCTTTCCCCAATTGTTACCACAAAGCAAgtacgttttcagtactcaagtttgcatctttctagaagtatcacttggttttcaatgtgatcattattggtttttggtaccag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G58140.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G58140.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv19s0027g01150.t01 (Vitis vinifera), 5'ss of exon 3
TGGTATCTTAAAAAACGCTATCTACGATTACTTTGATTCCAATTACTCAAACAAGTTTGAGAAGTTCGAAGACCTTTCCCCAATTGTTACCACAAAGCAAgtacgttt-tcagtactcaagtttgcatctttctagaagtatcacttggttttcaatgtgatcat-tattgg--tttttggtaccag-------------
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TGGAATTGTGAAGAATGCAATATATGATTATTTCGATGCCAATTACTCAAACAAATTTGATAAGTTTGACGACCTTTGCCCAATAGTCTCCACAAAAGAGgtttgaccattaagaaataaaatagaaattgcatgcatgttttttttttcactgttttgagccatacattgcactatttggaacttgcattatcttgcta
upper sequence: AT3G58140.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv11s0103g00120.t01 (Vitis vinifera), 5'ss of exon 2
TGGTATCTTAAAAAACGCTATCTACGATTACTTTGATTCCAATTACTCAAACAAGTTTGAGAAGTTCGAAGACCTTTCCCCAATTGTTACCACAAAGCAAgtacgttt-tcagtactcaagtttgcatctttctagaag--tatcacttggttttcaatgtgatcattattggtttttggtaccag--------------
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TGGAATTCTGAAGAATGCAATATATGATTATTTTGATGCCAATTACTCAAACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccattaagaaataaaatagaaattgtatgcttgctttttttttttttttcactgttttgagccatacgttgcactatttagaacttgtattatcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116422564|gb|EG465156.1|EG465156EST: AAGTTTGAGAAGTTCGAAGACCTTTCCCCAATTGTTACCACAAAGCAA AACTTTGATGATGTGCTAGTCCCTGCTGATCATGTAAGCAGAAGTCTTAAT
genomic: AAGTTTGAGAAGTTCGAAGACCTTTCCCCAATTGTTACCACAAAGCAAgtacgttttc ... ttggtaccagAACTTTGATGATGTGCTAGTCCCTGCTGATCATGTAAGCAGAAGTCTTAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGTATCTTAAAAAACGCTATCTACGATTACTTTGATTCCAATTACTCAAACAAGTTTGAGAAGTTCGAAGACCTTTCCCCAATTGTTACCACAAAGCAAgtacgttttcagtactcaagtttgcatctttctagaagtatcacttggttttcaatgtgatcattattggtttttggtaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA