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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGATCCTCGACGCCGCATCATCGTTCGGCACCGTGACGAGTTCCCGCAACAGTGAAGTCGTCCACGCCGGAATCTATTATCCACCAAACTCTCTAAAGgtacaatctttctcttgaggatcgaatcagatgtgtgttttggtaagttcaatagtgagttttgtttggattttgagcag

Basic information

species Arabidopsis thaliana
transcript AT3G56840.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G56840.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G035709_T01 (Zea mays), 5'ss of exon 1
TCTGATCCTCGACGCCGCATCATCGTTCGGCACCGTGACGAGTTCCCGCAACAGTGAAGTCGTCCACGCCGGAATCTATTATCCACCA--AACTCTCTAAAGgtacaatctttctcttgaggatcgaatcagatgtgtgttttggtaagttc-aatagtgagttttgtttggattttgagcag-----------------
  |  |  |||| || ||  |    ||||||||||  || |||||||||||||| || ||| |||||||||| ||||| || || ||   || |||  |   |  ||  |  | |  || |   |  |        |||    ||  | | |  ||   | | || |  |  | |||| ||                   
AGTCGTGGTCGAGGCGGCCCCCAGTTTCGGCACCGGCACCAGTTCCCGCAACAGCGAGGTCATCCACGCCGGTATCTACTACCCTCCGCGAAGTCTTAAGgtgcgcacgccgtttgctgtgtccccgaattcgccagtgcgcaggggaatcctgattcagtgcttggagtaaagtttgggcgtcaattgtcggtggctca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86060580|gb|DR356337.1|DR356337
EST:     ACAGTGAAGTCGTCCACGCCGGAATCTATTATCCACCAAACTCTCTAAAG                         GCCAAGTTTTGTGTAAGAGGGAGGGAATTGCTGTATAAATACTGCTCTGAA
genomic: ACAGTGAAGTCGTCCACGCCGGAATCTATTATCCACCAAACTCTCTAAAGgtacaatctt ... ttttgagcagGCCAAGTTTTGTGTAAGAGGGAGGGAATTGCTGTATAAATACTGCTCTGAA