1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTTCTTTTGAGGATCAGATCGTGACAGGGTTTAGCTCAAGGAGAGgtattagatccgtactttgtgataaactttctcaaggtttacgatctcattctatctagatcggcttcgtatagatacaatcttgtttcaattagcaatggatcgattttgttattcgaatatttagaaaaaggaaagatttttccaaaggggtttcctcttataccattttttctgggttttttgaaatttag
species | Arabidopsis thaliana |
transcript | AT3G55770.6 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTTCTTTTGAGGATCAGATCGTGACAGGGTTTAGCTCAAGGAGAG GGTGAGAAAAAGAAGAAGAAGGTGAGAAAAGTGAAGGCAAGGCTTTGAGGAEST: gi|125128253|gb|EL172679.1|EL172679
genomic: TTTCTTTTGAGGATCAGATCGTGACAGGGTTTAGCTCAAGGAGAGgtattagatc ... tgaaatttagGGTGAGAAAAAGAAGAAGAAGGTGAGAAAAGTGAAGGCAAGGCTTTGAGGA
EST: TTTCTTTTGAGGATCAGATCGTGACAGGGTTTAGCTCAAGGAGAG GGTGAGAAAAAGAAGEST: gi|124891350|gb|EH970252.1|EH970252
genomic: TTTCTTTTGAGGATCAGATCGTGACAGGGTTTAGCTCAAGGAGAGgtattagatc ... tgaaatttagGGTGAGAAAAAGAAG
EST: TTTCTTTTGAGGATCAGATCGTGACAGGGTTTAGCTCAAGGAGAG GGTGAGAAAAAGAAGAAGAAGGTGAGAAAAGTGAAGGCAAGGCTTTGAGGEST: gi|301502045|gb|HO207585.1|HO207585
genomic: TTTCTTTTGAGGATCAGATCGTGACAGGGTTTAGCTCAAGGAGAGgtattagatc ... tgaaatttagGGTGAGAAAAAGAAGAAGAAGGTGAGAAAAGTGAAGGCAAGGCTTTGAGG
EST: ACTTTCTTTTGAGGATCAGATCGTGACAGGGTTTAGCTCAAGGAGAG GGTGAGAAAAAGAAGAAGAAGGTGAGAAAAGTGAAGGCAAGGCTTTGAGGA
genomic: ACTTTCTTTTGAGGATCAGATCGTGACAGGGTTTAGCTCAAGGAGAGgtattagatc ... tgaaatttagGGTGAGAAAAAGAAGAAGAAGGTGAGAAAAGTGAAGGCAAGGCTTTGAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCTTTTGAGGATCAGATCGTGACAGGGTTTAGCTCAAGGAGAGgtattagatccgtactttgtgataaactttctcaaggtttacgatctcattctatctagatcggcttcgtatagatacaatcttgtttcaattagcaatggatcgattttgttattcgaatatttagaaaaaggaaagatttttccaaaggggtttcctcttataccattttttctgggttttttgaaatttag
- - - - GAGGAT
- - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - AGGAGA