Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGAATGGCGAAGTTGTTGCTTGGTGAAGACATGTCTGGTTCTGGTGAAGGAGTTTGTCCTGCTTTGGCTATTTCTAATGCCATTACCAATCTCTATGgtagttttatttcgaagttccatactttagtttgatgtttctttgatatcttactttacttatgagtctaacttttgatttcaatgtgatgaaag

Basic information

species Arabidopsis thaliana
transcript AT3G55660.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G55660.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA11G34690.1 (Glycine max), 5'ss of exon 1
GAGAGAATGGCGAAGTTGTTGCTTGGTGAAGACATGTCTGGTTCTGGTGAAGGAGTTTGTCCTGCTTTGGCTATTTCTAATGCCATTACCAATCTCTATGgtag---ttttatttcgaagttccatactttagtttgatgtttctttgatatcttactttacttatgagtctaactt--ttgat--ttcaatgtgatgaaag-----------------------------------------------------------------
|||||  | || || ||||||||||||||||| ||||| ||||||||  |||| |||||  |||||||||| ||||||||||||||||| |||||||  ||||    ||  || | | |    | | | |  | |   | | |  |||| |   |  ||   |  |  |||||  ||     ||  |||||  |  ||||                                                                   
GAGAGGTTTGCAAAATTGTTGCTTGGTGAAGATATGTCAGGTTCTGGAAAAGGGGTTTGCACTGCTTTGGCCATTTCTAATGCCATTACTAATCTCTGCGgtatgctttccatcttgcaaacacttgcataggctcattatgtaattgagaagctgtttacttagtttgtctatgttggcaaatagttcaaaattttgaattttctgttctggttttaaatttgagttttataacttattcaagtttggattatttgcaacttgtag

upper sequence: AT3G55660.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA18G03610.1 (Glycine max), 5'ss of exon 1
GAGAGAATGGCGAAGTTGTTGCTTGGTGAAGACATGTCTGGTTCTGGTGAAGGAGTTTGTCCTGCTTTGGCTATTTCTAATGCCATTACCAATCTCTATGgta---gttttatttcgaagttccatactttagtttgatgtttctttgatatcttactttacttatgagtctaacttttgatttcaatgtgatgaaag-----------------------------------------------------------------
|||||  | || || ||||||||||||||||| ||||| ||||||||  |||| |||||  |||||||||| || |||||||||||||| ||||| |  ||||    || | | | | ||   |  || |  | |     | |  |||| |   |  ||   || |   | |      | | |||||  |  ||||                                                                   
GAGAGGTTTGCAAAATTGTTGCTTGGTGAAGATATGTCAGGTTCTGGAAAAGGGGTTTGCACTGCTTTGGCCATCTCTAATGCCATTACTAATCTGTGCGgtatggtttctctcttgcaggcactgacataggctcacgatgtaattgagaaactgtttagtttgtctatgttggcaattagttcaaatttttgaattttctgttctggttttaaatttgagttttataacttattcaaatttggattatttgcaacgtgtag

upper sequence: AT3G55660.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv13s0019g02710.t01 (Vitis vinifera), 5'ss of exon 2
GAGAGAATGGCGAAGTTGTTGCTTGGTGAAGACATGTCTGGTTCTGGTGAAGGAGTTTGTCCTGCTTTGGCTATTTCTAATGCCATTACCAATCTCTATGgta-gtttt---------atttcgaagttccatactttagtttgat-gtttctttgatatcttactttacttatgagtc---taacttttgat-ttcaatgtgatgaaag-
|||||  |  ||||  |||||||||||||||||||||| || |||||  |||| |||||| | |||||||| ||||| ||||| || |||||||| |  |||  |||||         |||   | | |   |  || ||||   | || | |||  | |     |||| ||   | ||   | | ||    | ||| |||| ||  |   
GAGAGGTTTTCGAAACTGTTGCTTGGTGAAGACATGTCAGGGTCTGGAAAAGGGGTTTGTACAGCTTTGGCCATTTCAAATGCTATCACCAATCTTTGCGgtgtgttttctctctctcattctaaggctttgtttttcagttaattagtcttttttttttggctttttaattgcaattcatttcatttccattattccatgtcatctatag