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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGGACTGCAGTTGTTACTGGGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAGgtattttgatatactcaatatatgttcttgctttaaaaacagaatcgaaaaaatggtttttgaaggacttgtgtaatataatatcag

Basic information

species Arabidopsis thaliana
transcript AT3G55610.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86064871|gb|DR360628.1|DR360628
EST:     GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAG                         CTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT
genomic: GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAGgtattttgat ... ataatatcagCTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT
EST: gi|86064874|gb|DR360631.1|DR360631
EST:     GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAG                         CTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT
genomic: GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAGgtattttgat ... ataatatcagCTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT
EST: gi|86064868|gb|DR360625.1|DR360625
EST:     GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAG                         CTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT
genomic: GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAGgtattttgat ... ataatatcagCTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT
EST: gi|152033743|gb|BP562130.3|BP562130
EST:     GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAG                         CTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT
genomic: GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAGgtattttgat ... ataatatcagCTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT
EST: gi|86064870|gb|DR360627.1|DR360627
EST:     GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAG                         CTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT
genomic: GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAGgtattttgat ... ataatatcagCTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT
EST: gi|86064867|gb|DR360624.1|DR360624
EST:     GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAG                         CTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT
genomic: GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAGgtattttgat ... ataatatcagCTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT
EST: gi|86064869|gb|DR360626.1|DR360626
EST:     GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAG                         CTTGCGGAGTTAAACTCAGATGGATTTGAGGNCATTTTGGTGTCATCTGGT
genomic: GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAGgtattttgat ... ataatatcagCTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGGGACTGCAGTTGTTACTGGGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAGgtattttgatatactcaatatatgttcttgctttaaaaacagaatcgaaaaaatggtttttgaaggacttgtgtaatataatatcag

- - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT