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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATCGATTTGAGTGGAGATGGTGGCGTCTTGAAAAAGATTGTAAGGAGTGCCAAACCTGATGCTATTTCACCCTCTGATGATCTTCCTGTTGTCGATGgtatgttcttaagattgactagtgatcagggtcaatatattgttcatctactgcttatgctactcctaattatatgtgttgatgaaggaccataaccttgtttgattttaacttag

Basic information

species Arabidopsis thaliana
transcript AT3G55520.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86027819|gb|DR323572.1|DR323572
EST:     TGCCAAACCTGATGCTATTTCACCCTCTGATGATCTTCCTGTTGTCGATG                         TTCATTATGAGGGTATCTTGGCTGAAGACGAAAAGGTTTTCGACACTACTC
genomic: TGCCAAACCTGATGCTATTTCACCCTCTGATGATCTTCCTGTTGTCGATGgtatgttctt ... tttaacttagTTCATTATGAGGGTATCTTGGCTGAAGACGAAAAGGTTTTCGACACTACTC
EST: gi|86027820|gb|DR323573.1|DR323573
EST:     TGCCAAACCTGATGCTATTTCACCCTCTGATGATCTTCCTGTTGTCGATG                         TTCATTATGAGGGTATCTTGGCTGAAGACGAAAAGGTTTTCGACACTACTC
genomic: TGCCAAACCTGATGCTATTTCACCCTCTGATGATCTTCCTGTTGTCGATGgtatgttctt ... tttaacttagTTCATTATGAGGGTATCTTGGCTGAAGACGAAAAGGTTTTCGACACTACTC
EST: gi|86027816|gb|DR323569.1|DR323569
EST:     TGCCAAACCTGATGCTATTTCACCCTCTGATGATCTTCCTGTTGTCGATG                         TTCATTATGAGGGTATCTTGGCTGAAGACGAAAAGGTTTTCGACACTACTC
genomic: TGCCAAACCTGATGCTATTTCACCCTCTGATGATCTTCCTGTTGTCGATGgtatgttctt ... tttaacttagTTCATTATGAGGGTATCTTGGCTGAAGACGAAAAGGTTTTCGACACTACTC
EST: gi|86027814|gb|DR323567.1|DR323567
EST:     TGCCAAACCTGATGCTATTTCACCCTCTGATGATCTTCCTGTTGTCGATG                         TTCATTATGAGGGKATCTTGGCTGAAGACGGAAAGGKTTTCGACACTACTC
genomic: TGCCAAACCTGATGCTATTTCACCCTCTGATGATCTTCCTGTTGTCGATGgtatgttctt ... tttaacttagTTCATTATGAGGGTATCTTGGCTGAAGACGAAAAGGTTTTCGACACTACTC
EST: gi|86027813|gb|DR323566.1|DR323566
EST:     TGCCAAACCTGATGCTATTTCACCCTCTGATGATCTTCCTGTTGTCGATG                         TTCATTATGAGGGTATCTTGGCTGAAGACGAAAAGGTTTTCGACACTACTC
genomic: TGCCAAACCTGATGCTATTTCACCCTCTGATGATCTTCCTGTTGTCGATGgtatgttctt ... tttaacttagTTCATTATGAGGGTATCTTGGCTGAAGACGAAAAGGTTTTCGACACTACTC
EST: gi|86027818|gb|DR323571.1|DR323571
EST:     TGCCAAACCTGATGCTATTTCACCCTCTGATGATCTTCCTGTTGTCGATG                         TTCATTATGAGGGTATCTT
genomic: TGCCAAACCTGATGCTATTTCACCCTCTGATGATCTTCCTGTTGTCGATGgtatgttctt ... tttaacttagTTCATTATGAGGGTATCTT
EST: gi|86027815|gb|DR323568.1|DR323568
EST:     TGCCAAACCTGATGCTATTTCACCCTCTGATGATCTTCCTGTTGTCGATG                         TTCATTATGAGGGTATCTTGGCTGAAGACGAAAAGGTTTTCGACACTACTC
genomic: TGCCAAACCTGATGCTATTTCACCCTCTGATGATCTTCCTGTTGTCGATGgtatgttctt ... tttaacttagTTCATTATGAGGGTATCTTGGCTGAAGACGAAAAGGTTTTCGACACTACTC