Sequence
atgc intronic sequence ATGC exonic sequenceAGCTATTGTAAAAGAGTTCTACGCTCGTGTTTTCGCAAACGGTGATATTTACAGAGCTGATTATGAAGGTCTTTACTGTGTTAACTGCGAGGAATATAAGgtttgattttgaaatttggaaaggtatatatactttcttgcctgtgccacaagctttatgggtctgctttgtttttgaattctgtag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G55400.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G55400.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA20G23250.1 (Glycine max), 5'ss of exon 3
AGCTATTGTAAAAGAGTTCTACGCTCGTGTTTTCGCAAACGGTGATATTTACAGAGCTGATTATGAAGGTCTTTACTGTGTTAACTGCGAGGAATATAAGgtttgattttgaaatttggaaaggtatatatactttcttgcctgtgccacaagctttatgggtctg---ctttgtttttgaattctgtag------------
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AGCAATTGTGAAGGAATTTTATTCAAGAGTGCTTGCCAATGGTGACATCTACCGAGCTGATTATGATGGACTTTATTGTGTAAACTGTGAGGAATATAAGgtgattgtttgaactt--ggaagttgtagctctggtactggccatattttatgtttaatttatataagttttttattttgaagggtctgagtgtgtcctgtg
upper sequence: AT3G55400.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA10G43550.1 (Glycine max), 5'ss of exon 3
AGCTATTGTAAAAGAGTTCTACGCTCGTGTTTTCGCAAACGGTGATATTTACAGAGCTGATTATGAAGGTCTTTACTGTGTTAACTGCGAGGAATATAAGgtt-tgattttgaaatttggaa---aggtatatatactttcttgcctgtgcc----acaagctttatgggtctgctttgtttt--tgaattctgtag----
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AGCAATTGTGAAGGAATTTTACTCAAGAGTGCTTGCCAATGGTGACATCTACCGAGCTGATTATGACGGACTTTATTGTGTAAACTGTGAGGAATATAAGgtgattgtttgagaagttgtagctctggcactggcaatattttatgtttaatttatataagctctttat-tttgaagggtccgagtgtgtcctgtgaactgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116429746|gb|EG472338.1|EG472338EST: ACAGAGCTGATTATGAAGGTCTTTACTGTGTTAACTGCGAGGAATATAAG GATGAGAAAGAGTTGCTTGAAAACAATTGTTGCCCTGTCCATCAAATGCCA
genomic: ACAGAGCTGATTATGAAGGTCTTTACTGTGTTAACTGCGAGGAATATAAGgtttgatttt ... aattctgtagGATGAGAAAGAGTTGCTTGAAAACAATTGTTGCCCTGTCCATCAAATGCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCTATTGTAAAAGAGTTCTACGCTCGTGTTTTCGCAAACGGTGATATTTACAGAGCTGATTATGAAGGTCTTTACTGTGTTAACTGCGAGGAATATAAGgtttgattttgaaatttggaaaggtatatatactttcttgcctgtgccacaagctttatgggtctgctttgtttttgaattctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT