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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCGTGAAAAGAATCTATCTTGAGCAATGTCTCCAGCTAAAGgtacgcctttttttctttcattgttatctgatttgattctacatcgtcttctatttctcttttgcgtgtaattactttgtttatcattattcaatactgt...

Basic information

species Arabidopsis thaliana
transcript AT3G55280.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076984|gb|DR372741.1|DR372741
EST:     AGAATCTATCTTGAGCAATGTCTCCAGCTAAAG                         TTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAGCTGCGA
genomic: AGAATCTATCTTGAGCAATGTCTCCAGCTAAAGgtacgccttt ... atttttgcagTTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAGCTGCGA
EST: gi|152035088|gb|BP844212.2|BP844212
EST:     GTTTCGTGAAAAGAATCTATCTTGAGCAATGTCTCCAGCTAAAG                         TTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTGGAAAGCTGCGA
genomic: GTTTCGTGAAAAGAATCTATCTTGAGCAATGTCTCCAGCTAAAGgtacgccttt ... atttttgcagTTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAGCTGCGA
EST: gi|116415207|gb|EG457799.1|EG457799
EST:     GTTTCGTGAAAAGAATCTATCTTGAGCAATGTCTCCAGCTAAAG                         CTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAGCTGCGA
genomic: GTTTCGTGAAAAGAATCTATCTTGAGCAATGTCTCCAGCTAAAGgtacgccttt ... atttttgcagTTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAGCTGCGA
EST: gi|86083163|gb|DR378922.1|DR378922
EST:     GTTTCGTGAAAAGAATCTATCTTGAGCAATGTCTCCAGCTAAAG                         TTGATGTCACCAAGAAAGCCGACCCTAAGGCTA
genomic: GTTTCGTGAAAAGAATCTATCTTGAGCAATGTCTCCAGCTAAAGgtacgccttt ... atttttgcagTTGATGTCACCAAGAAAGCCGACCCTAAGGCTA
EST: gi|152033917|gb|BP819853.2|BP819853
EST:     GTTTCGTGAAAAGAATCTATCTTGAGCAATGTCTCCAGCTAAAG                         TTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAGCTGCGA
genomic: GTTTCGTGAAAAGAATCTATCTTGAGCAATGTCTCCAGCTAAAGgtacgccttt ... atttttgcagTTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAGCTGCGA
EST: gi|86018728|gb|DR314474.1|DR314474
EST:     GCTCAGGTTTCGTGAAAAG-ATCTATCTTGAGCAATGTCTCCAGCTAAAG                         TTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAGCTGCGA
genomic: GCTCAGGTTTCGTGAAAAGAATCTATCTTGAGCAATGTCTCCAGCTAAAGgtacgccttt ... atttttgcagTTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAGCTGCGA
EST: gi|124939812|gb|EL016323.1|EL016323
EST:     AATCTATCTTGAGCAATGTCTCCAGCTAAAG                         TTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAAGCTGCG
genomic: AATCTATCTTGAGCAATGTCTCCAGCTAAAGgtacgccttt ... atttttgcagTTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAA-GCTGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTCGTGAAAAGAATCTATCTTGAGCAATGTCTCCAGCTAAAGgtacgcctttttttctttcattgttatctgatttgattctacatcgtcttctatttctcttttgcgtgtaattactttgtttatcattattcaatactgt

- - - -  AAAGAA