Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGAATAATACCAAACTGAAACGGATTCTTGTAGACTACATGCTGCGGATGTCATATTTCGAGACTGCTACAAAGCTTTCGGAAAGCAGCAATATTATGgtttctctcatcctcttgacactcattatatcacactattatgctatattgctgtcttggttaatatatcagaacatattctttgctgtttcgtttttacaagcagtgaaacagatttgttgatttgtactgcatctctatgaaatgctaattataaatatctcatcttttcag

Basic information

species Arabidopsis thaliana
transcript AT3G55070.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G55070.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv13s0067g03560.t01 (Vitis vinifera), 5'ss of exon 2
ATGGAATAATACCAAACTGAAACGGATTCTTGTAGACTACATGCTGCGGATGTCATATTTCGAGACTGCTACAAAGCTTTCGGAAAGCAGCAATATTATGgtttctctcatcctcttgacactcattatatcacactattatgctatattgctgtcttggttaatatatcagaacatattctttgctgtttcgtttttacaagcagtgaaacagatttgttgatttgtactgcatctctatgaaatgctaattataaatatctcatcttttcag
||||||||||||     |||| ||||||||||| || |||||| |||||||||||||||  || ||||| |  |||||   ||| ||||||||| |   |||       |  || |||  |   ||| ||| |||   | ||  |||  || ||  |  |||  || ||  |  |  ||| | |   | |   |   ||     | |  ||                                                               
ATGGAATAATACGCGCTTGAAGCGGATTCTTGTGGATTACATGTTGCGGATGTCATATTATGATACTGCAATGAAGCTGGTGGAGAGCAGCAATTTGCAGgt-------aaacttttgggatatattttataacagggtaat-ttattgtgatgggtcagtt--taaattggctcgaattttgt-tggatatatcaataactttatttcaa---------------------------------------------------------------