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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTGACATTAGTCGACGATTTGCTCTTTTGCTTAAATCTGGTTGGAGACCACGTAGGACCATTCTCCTTTGTAGTTGGGATGCAGAAGAATTTGGAATGgttagtaaattagtaacttcgaaaagttgaatctatatatgatgcttcactaaattacttgtgttctcttttttgttgtatag

Basic information

species Arabidopsis thaliana
transcript AT3G54720.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G54720.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os03g57660.3 (Oryza sativa), 5'ss of exon 2
ACTTGACATTAGTCGACGATTTGCTCTTTTGCTTAAATCTGGTTGGAGACCACGTAGGACCATTCTCCTTTGTAGTTGGGATGCAGAAGAATTTGGAATGgttagt--aaattagt-aacttcgaaaagttgaatctatatatgatgcttcactaaattacttgtgttctcttttttgttgtatag--------------
 ||||| |||  ||| ||  |||   |  ||||  | || || |||| |||||| ||||||||  | ||||||||||||||||| ||||| ||||||||||| |||  | ||||   ||  | || ||  ||   ||  | |  |||    |    |   | ||      |          ||                 
TCTTGATATTGCTCGGCGTCTTGGAATAATGCTGCAGTCAGGCTGGACACCACGGAGGACCATCATTCTTTGTAGTTGGGATGCCGAAGAGTTTGGAATGgtgagttcatattaaagaaaattgagaatatgttgctgaacaccatgtgaaaaaggaaaccatgcagatgcccccacaccctaacattttcaaagtaaca

upper sequence: AT3G54720.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA10G11100.1 (Glycine max), 5'ss of exon 3
ACTTGACATTAGTCGACGATTTGCTCTTTTGCTTAAATCTGGTTGGAGACCACGTAGGACCATTCTCCTTTGTAGTTGGGATGCAGAAGAATTTGGAATGgttagtaaatt-agtaacttcga-------aaagttgaatctatatatgatgct-tcactaaattacttgtgttctcttttttgttgtatag---------
||||||||||  | |  ||||| || || |  |    |  || ||||  ||||| ||||||||  | || || |||||||||||||| ||||||||||||||  |||  |  | |||  ||         |  ||| |   | |  || |||   ||| |  || | |  |      |    |  || ||           
ACTTGACATTGCTGGCAGATTTTCTATTCTATTGCGTTTGGGGTGGACTCCACGGAGGACCATCATTCTATGCAGTTGGGATGCAGAGGAATTTGGAATGgtaggtagctccactaatctcatgtgcatcatggttaaccattttcatcatgtgatcattggat-attgataagtgataagctagtgaatttagtgacaaa