1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGTCAAAGAAAATTCTGGTTAAGTGTTTGGCGATGGATGATAAACTTCTTGTTGATGCCATAGCTGATGGTGGAGCAGAACCTGCTCATCTTGAGATTAAgtaagtttctctttatttgtgctcgattctgattctttttgtgcaaatctagtaagaattttctggttgtttgtgcag
species | Arabidopsis thaliana |
transcript | AT3G53970.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTTGATGCCATAGCTGATGGTGGAGCAGAACCTGCTCATCTTGAGATTAA AGTTGGGGATTATGCTGAGGAAAGCAATGAGGGGGATTACTCTGCGCAGTTEST: gi|124940323|gb|EL016784.1|EL016784
genomic: GTTGATGCCATAGCTGATGGTGGAGCAGAACCTGCTCATCTTGAGATTAAgtaagtttct ... gtttgtgcagAGTTGGGGATTATGCTGAGGAAAGCAATGAGGGGGATTACTCTGCGCAGTT
EST: GTTGATGCCATAGCTGATGGTGGAGCAGAACCTGCTCATCTTGAGATTAA AGTTGGGGATTATGCTGAGGAAAGCAATGAGGGG-ATTA
genomic: GTTGATGCCATAGCTGATGGTGGAGCAGAACCTGCTCATCTTGAGATTAAgtaagtttct ... gtttgtgcagAGTTGGGGATTATGCTGAGGAAAGCAATGAGGGGGATTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCAAAGAAAATTCTGGTTAAGTGTTTGGCGATGGATGATAAACTTCTTGTTGATGCCATAGCTGATGGTGGAGCAGAACCTGCTCATCTTGAGATTAAgtaagtttctctttatttgtgctcgattctgattctttttgtgcaaatctagtaagaattttctggttgtttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG