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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAAATCTCAAAAATGGAGAACGACGCAGGTCAGGTCACAGAGCTCTACATTCCAAGGAAATGgtatatatcagctctctttgttctctgtgtaacgtttgattaaaatcttaagctaattgtcttaattaagtagcctaagctgattctattgttgtgtaatggtaatttgtttag

Basic information

species Arabidopsis thaliana
transcript AT3G53890.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86060807|gb|DR356564.1|DR356564
EST:     ATGGAGAACGACGCAGGTCAGGTCACAGAGCTCTACATTCCAAGGAAATG                         CTCGGCAACAAACAGAATGATCACATCAAAGGATCATGCTTCAGTTCAGCT
genomic: ATGGAGAACGACGCAGGTCAGGTCACAGAGCTCTACATTCCAAGGAAATGgtatatatca ... atttgtttagCTCGGCAACAAACAGAATGATCACATCAAAGGATCATGCTTCAGTTCAGCT
EST: gi|124784177|gb|EH873939.1|EH873939
EST:     GACGCAGGTCAGGTCACAGAGCTCTACATTCCAAGGAAATG                         CTCGGCAACAAACAGAA
genomic: GACGCAGGTCAGGTCACAGAGCTCTACATTCCAAGGAAATGgtatatatca ... atttgtttagCTCGGCAACAAACAGAA
EST: gi|164124668|gb|ES046741.1|ES046741
EST:     CCAAGGAAATG                         CTCGGCAACAAACAGAATGATCACATCAAAGGATCATGCTTCAGTTCAGCT
genomic: CCAAGGAAATGgtatatatca ... atttgtttagCTCGGCAACAAACAGAATGATCACATCAAAGGATCATGCTTCAGTTCAGCT
EST: gi|86086803|gb|DR382562.1|DR382562
EST:     ATGGAGAACGACGCAGGTCAGGTCACAGAGCTNTACATTCCAAGGAAATG                         CTCGGCAACAAACAGAATGATCACATCAAAGGATCATGCTTCAGTTCAGCT
genomic: ATGGAGAACGACGCAGGTCAGGTCACAGAGCTCTACATTCCAAGGAAATGgtatatatca ... atttgtttagCTCGGCAACAAACAGAATGATCACATCAAAGGATCATGCTTCAGTTCAGCT
EST: gi|164193142|gb|ES001331.1|ES001331
EST:     TTCCAAGGAAATG                         CTCGGCAGCAAACAGAATGATCACATCAAAGGATCATGCTTCAGTTCAGCT
genomic: TTCCAAGGAAATGgtatatatca ... atttgtttagCTCGGCAACAAACAGAATGATCACATCAAAGGATCATGCTTCAGTTCAGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTAAATCTCAAAAATGGAGAACGACGCAGGTCAGGTCACAGAGCTCTACATTCCAAGGAAATGgtatatatcagctctctttgttctctgtgtaacgtttgattaaaatcttaagctaattgtcttaattaagtagcctaagctgattctattgttgtgtaatggtaatttgtttag

- - - - - - - TGGAGA
- - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA