1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GACAACTCCACAAGTGAAGACCGGTTTGTTCGTTGGGTTGAACAAGGGACATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGAgtatgttgtttcacttttgccttctgttaaaattgttttgaaacattcattttagtagtttctagactatgttaggttgctttagtttcgttcagatagt...
species | Arabidopsis thaliana |
transcript | AT3G53740.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGAA AAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCEST: gi|163996752|gb|EL967809.1|EL967809
genomic: GTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGG-Agtatgttgtt ... atttgctcagAAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGC
EST: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGA AAAACGAGCAAGAEST: gi|86037334|gb|DR333089.1|DR333089
genomic: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGAgtatgttgtt ... atttgctcagAAAACGAGCAAGA
EST: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGA AAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCTEST: gi|125023467|gb|EL095736.1|EL095736
genomic: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGAgtatgttgtt ... atttgctcagAAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCT
EST: ATGTTGTTGCCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGA AAAACGAGCAAGAGGACAATEST: gi|164062781|gb|ES210724.1|ES210724
genomic: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGAgtatgttgtt ... atttgctcagAAAACGAGCAAGAGGACAAT
EST: ANGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGA AAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCTEST: gi|125111290|gb|EL162829.1|EL162829
genomic: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGAgtatgttgtt ... atttgctcagAAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCT
EST: TGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAAGGA AAAACGAGCAAGAGGACAATCTEST: gi|124890065|gb|EH968967.1|EH968967
genomic: TGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAA-GGAgtatgttgtt ... atttgctcagAAAACGAGCAAGAGGACAATCT
EST: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGA AAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCTEST: gi|125092443|gb|EL150266.1|EL150266
genomic: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGAgtatgttgtt ... atttgctcagAAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCT
EST: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGA AAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAEST: gi|164215326|gb|ES072447.1|ES072447
genomic: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGAgtatgttgtt ... atttgctcagAAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGA
EST: GACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGA AAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCTEST: gi|125199379|gb|EL214333.1|EL214333
genomic: GACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGAgtatgttgtt ... atttgctcagAAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCT
EST: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGA AAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCTEST: gi|164141060|gb|EL968625.1|EL968625
genomic: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGAgtatgttgtt ... atttgctcagAAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCT
EST: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGA AAAACGAGCAAGAEST: gi|164022168|gb|ES005011.1|ES005011
genomic: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGAgtatgttgtt ... atttgctcagAAAACGAGCAAGA
EST: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGA AAAAACGAGCAAGAEST: gi|86053782|gb|DR349539.1|DR349539
genomic: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGAgtatgttgtt ... atttgctcagAAAA-CGAGCAAGA
EST: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGA AAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCTEST: gi|86086302|gb|DR382061.1|DR382061
genomic: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGAgtatgttgtt ... atttgctcagAAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCT
EST: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGA AAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCTEST: gi|164205334|gb|ES094977.1|ES094977
genomic: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGAgtatgttgtt ... atttgctcagAAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCT
EST: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGA AAAACGAGCAAGAGGACAATCTTTATEST: gi|86037373|gb|DR333128.1|DR333128
genomic: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGAgtatgttgtt ... atttgctcagAAAACGAGCAAGAGGACAATCTTTAT
EST: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGA AAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCTEST: gi|125073108|gb|EL137561.1|EL137561
genomic: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGAgtatgttgtt ... atttgctcagAAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCT
EST: TACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGA AAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCTEST: gi|164007941|gb|ES013723.1|ES013723
genomic: TACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGAgtatgttgtt ... atttgctcagAAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCT
EST: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGA AAA-CGAGCAAGAGGACAATCTTTATCAGAAEST: gi|125066008|gb|EL133033.1|EL133033
genomic: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGAgtatgttgtt ... atttgctcagAAAACGAGCAAGAGGACAATCTTTATCAGAA
EST: TGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAAGGA AAAACGAGCAAGAGGACAATCTTEST: gi|124944972|gb|EL021022.1|EL021022
genomic: TGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAA-GGAgtatgttgtt ... atttgctcagAAAACGAGCAAGAGGACAATCTT
EST: CCTCGTTCTCGCAAAGGA AAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCTEST: gi|164008601|gb|EL971296.1|EL971296
genomic: CCTCGTTCTCGCAAAGGAgtatgttgtt ... atttgctcagAAAACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCT
EST: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGA AAAACGAGCAAGAGGACAATC
genomic: ATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGAgtatgttgtt ... atttgctcagAAAACGAGCAAGAGGACAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAACTCCACAAGTGAAGACCGGTTTGTTCGTTGGGTTGAACAAGGGACATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGAgtatgttgtttcacttttgccttctgttaaaattgttttgaaacattcattttagtagtttctagactatgttaggttgctttagtttcgttcagatagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG