1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGGGTCTGGTGGGACTATGTGACTGACTTTGCTATCCGGTGTCCAATGAAGGAGAAGAAGTACACCAAGGAATGCGCAGATGGAATTATTAAGTCCCTTGgtgagtataatgcttcattacttcgatggtatttgctcctgtggtatcatttaattaacatattacctgtggctagaaattagtctagaaactgaatagt...
species | Arabidopsis thaliana |
transcript | AT3G52850.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGAGAAGAAGTACACCAAGGAATGCGCAGATGGAATTATTAAGTCCCTTG GCATTGATCTCAAAAAGGTGGACAAGTGTATCGGAGACCCTGAAGCAGATGEST: gi|164086768|gb|EL980498.1|EL980498
genomic: GGAGAAGAAGTACACCAAGGAATGCGCAGATGGAATTATTAAGTCCCTTGgtgagtataa ... atgcattcagGCATTGATCTCAAAAAGGTGGACAAGTGTATCGGAGACCCTGAAGCAGATG
EST: TAAGTCCCTTG GCATTGATCTCAAAAAGGTGGACAAGTGTATCGGAGACCCTGAAGCAGATGEST: gi|164170089|gb|ES215940.1|ES215940
genomic: TAAGTCCCTTGgtgagtataa ... atgcattcagGCATTGATCTCAAAAAGGTGGACAAGTGTATCGGAGACCCTGAAGCAGATG
EST: TAAGTCCCTTG GCATTGATCTCAAAAAGGTGGACAAGTGTATCGGAGACCCTGAAGCAGATGEST: gi|124884352|gb|EH963254.1|EH963254
genomic: TAAGTCCCTTGgtgagtataa ... atgcattcagGCATTGATCTCAAAAAGGTGGACAAGTGTATCGGAGACCCTGAAGCAGATG
EST: AAGAAGTACACCAAGGAATGCGCAGATGGAATTATTAAGTCCCTTG GCATTGATCTCAAAAAGGTGGACAAGTGTATCGGAGACCCTGAAGCAGATGEST: gi|86037688|gb|DR333443.1|DR333443
genomic: AAGAAGTACACCAAGGAATGCGCAGATGGAATTATTAAGTCCCTTGgtgagtataa ... atgcattcagGCATTGATCTCAAAAAGGTGGACAAGTGTATCGGAGACCCTGAAGCAGATG
EST: GGAGAAGAAGTACACCAAGGAATGCGCAGATGGAATTATTAAGTCCCTTG GCATTGATCTCAAAAAGGTGGACAAGTGTATCGGAGACCCTGAAGCAGATGEST: gi|86037687|gb|DR333442.1|DR333442
genomic: GGAGAAGAAGTACACCAAGGAATGCGCAGATGGAATTATTAAGTCCCTTGgtgagtataa ... atgcattcagGCATTGATCTCAAAAAGGTGGACAAGTGTATCGGAGACCCTGAAGCAGATG
EST: GGAGAAGAAGTACACCAAGGAATGCGCAGATGGAATTATTAAGTCCCTTG GCATTGATCTCAAAAAGGTGGACAAGTGTATCGGAGACCCTGAAGCAGATG
genomic: GGAGAAGAAGTACACCAAGGAATGCGCAGATGGAATTATTAAGTCCCTTGgtgagtataa ... atgcattcagGCATTGATCTCAAAAAGGTGGACAAGTGTATCGGAGACCCTGAAGCAGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGTCTGGTGGGACTATGTGACTGACTTTGCTATCCGGTGTCCAATGAAGGAGAAGAAGTACACCAAGGAATGCGCAGATGGAATTATTAAGTCCCTTGgtgagtataatgcttcattacttcgatggtatttgctcctgtggtatcatttaattaacatattacctgtggctagaaattagtctagaaactgaatagt
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaactg