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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCATTCAAAGAGATCATTCTTCTTCTTCTTCTTCTTTGAAGATGCTAATATCGCCTCCGATCAAAGCCAATGATCCAAAATCTCGACTTGTTTTACATgtatacacctcttttaagatatattgttatatcagtttttttcttctaacttttattgacacttttgtaaatgctttgagtgtag

Basic information

species Arabidopsis thaliana
transcript AT3G52180.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124741629|gb|EH832791.1|EH832791
EST:     TATCGCCTCCGATCAAAGCCAATGATCCAAAATCTCGACTTGTTTTACAT                         GCAGTATCAGAGTCAAAATCCAGCTCAGAG
genomic: TATCGCCTCCGATCAAAGCCAATGATCCAAAATCTCGACTTGTTTTACATgtatacacct ... ttgagtgtagGCAGTATCAGAGTCAAAATCCAGCTCAGAG
EST: gi|164070697|gb|ES118259.1|ES118259
EST:     TCCGATCAAAGCCAATGATCCAAAATCTCGACTTGTTTTACAT                         GCAGTATCAGAGTCAAAATCCAGCTCAG
genomic: TCCGATCAAAGCCAATGATCCAAAATCTCGACTTGTTTTACATgtatacacct ... ttgagtgtagGCAGTATCAGAGTCAAAATCCAGCTCAG