1 5' 3' | 2 5' 3' | 3 5' 3' |
TCGGGATTCATCACTGGTTCAATGGCAAACTCAAAAGCTGGAAAGAAGCTTTTTGGTCTCTTGCCTGGAGAGATTGTTCTCGCATCCCTCGATGGATTTAgtaagtagattacttgtttttggtttctcatatttcctatcccatgcttggagggtcataaaagcttcttgattcacgagttgccttgctttctttcatc...
species | Arabidopsis thaliana |
transcript | AT3G51250.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTTTGGTTTCTTGCCTGGAGAGATTGTTCTCGCATCCCTCGATGGATTTA GCAAGATCTGTGATGCTGTTGAAGTTGCTGGGAAAAACGTAATGTCGACTTEST: gi|125327517|gb|EL341597.1|EL341597
genomic: TTTTGGTCTCTTGCCTGGAGAGATTGTTCTCGCATCCCTCGATGGATTTAgtaagtagat ... cttgttgcagGCAAGATCTGTGATGCTGTTGAAGTTGCTGGGAAAAACGTAATGTCGACTT
EST: TTTGGTCTCTTGTCCTGGAGAGATTGTTCTCGCATCCCTCGATGGATTTA GCAAGATCTGTGATGCTGTTGAAGTT
genomic: TTTGGTCTCTTG-CCTGGAGAGATTGTTCTCGCATCCCTCGATGGATTTAgtaagtagat ... cttgttgcagGCAAGATCTGTGATGCTGTTGAAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGGGATTCATCACTGGTTCAATGGCAAACTCAAAAGCTGGAAAGAAGCTTTTTGGTCTCTTGCCTGGAGAGATTGTTCTCGCATCCCTCGATGGATTTAgtaagtagattacttgtttttggtttctcatatttcctatcccatgcttggagggtcataaaagcttcttgattcacgagttgccttgctttctttcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctatccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cataaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctttc