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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATTTTGGATCGTACCAATTGGAAAACCAAGATGCTTACATCACTCCTAATACCATACATCTTCCTTAGCCTTCCTAGTGTCATTTTCAACTTTCTCAGgtaacaatcttttcttgtcaaaagacacaactattcttaaaactgtagtctatatactggactggtgtaagtggcatttttcgatttttgttatcag

Basic information

species Arabidopsis thaliana
transcript AT3G50830.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502698|gb|HO208238.1|HO208238
EST:     ATACCATACATCTTCCTTAGCCTTCCTAGTGTCATTTTCAACTTTCTCAG                         TGGAGATGTTGGGAAATGGATTGCTTTCGTTGCGGTTGTTCTCAGACTTTT
genomic: ATACCATACATCTTCCTTAGCCTTCCTAGTGTCATTTTCAACTTTCTCAGgtaacaatct ... ttgttatcagTGGAGATGTTGGGAAATGGATTGCTTTCGTTGCGGTTGTTCTCAGACTTTT
EST: gi|124818632|gb|EH903498.1|EH903498
EST:     TACCATACATCTTCCTTAGCCTTCCTAGTGTCATTTTCAACTTTCTCAG                         TGGAGATGTTGGGAAATGGATTGCTTTCGTTGCGGTTGTTCTCAGACTTTT
genomic: TACCATACATCTTCCTTAGCCTTCCTAGTGTCATTTTCAACTTTCTCAGgtaacaatct ... ttgttatcagTGGAGATGTTGGGAAATGGATTGCTTTCGTTGCGGTTGTTCTCAGACTTTT
EST: gi|124837180|gb|EH921619.1|EH921619
EST:     ATACCATACATCTTCCTTAGCCTTCCTAGTGTCATTTTCAACTTTCTCAG                         TGGAGATGTTGGGAAATGGATTGCTTTCGTTGCGGTTGT
genomic: ATACCATACATCTTCCTTAGCCTTCCTAGTGTCATTTTCAACTTTCTCAGgtaacaatct ... ttgttatcagTGGAGATGTTGGGAAATGGATTGCTTTCGTTGCGGTTGT
EST: gi|124705640|gb|EH797042.1|EH797042
EST:     ATTTTCAACTTTCTCAG                         TGGAGATGTTGGGAAATGGATTGCTTTCGTTGCGGTTGTTCTCAGACTTTT
genomic: ATTTTCAACTTTCTCAGgtaacaatct ... ttgttatcagTGGAGATGTTGGGAAATGGATTGCTTTCGTTGCGGTTGTTCTCAGACTTTT