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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTTCTAAGAAATACGCTGTTCAATCTGATTGGAAAGCTCATTCCAAGATTTGTGGTACTAAAGAGTATAAATGTGATTGTGGTACTCTGTTTTCTAGgtaaagtgtttgccttttttgatcatacataagaaaaaattcaaaattcaacaatctaagttttgagtgatttttgtttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G50700.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G50700.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA01G38290.1 (Glycine max), 5'ss of exon 2
AATGTTCTAAGAAATACGCTGTTCAATCTGATTGGAAAGCTCATTCCAAGATTTGTGGTACTAAAGAGTATAAATGTGATTGTGGTACTCTGTTTTCTAGgt--aaagtgtttgccttt--tttgatcatac---ataagaaaaaatt--caaa------attcaacaatctaagttttgagtgatttttgtttgcag-------------------
| || |||||||||||||| |||||||| |||||||| ||||| ||||||||||| |||||   |||||||||||| |||||||| ||| |||| || ||||   |    |||| ||||  ||    | |||    |  || |  |||  ||||      |||     || |  | |||  |  | ||||||||                       
AGTGCTCTAAGAAATACGCGGTTCAATCCGATTGGAAGGCTCACTCCAAGATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGCACTTTGTTCTCGAGgttttacccttttggctttcattcacccttaccctttgtgatactattgacaaagtttctatttggggatttggggtttatgaaagttttgttttgtttttttgtttttttctgaag

upper sequence: AT3G50700.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv04s0023g01430.t01 (Vitis vinifera), 5'ss of exon 2
AATGTTCTAAGAAATACGCTGTTCAATCTGATTGGAAAGCTCATTCCAAGATTTGTGGTACTAAAGAGTATAAATGTGATTGTGGTACTCTGTTTTCTAGgtaa--agtgtttgccttttttga--tcatacataagaaaaaattcaaaattcaacaatctaag--ttttgagtgatttttgtttgcag---------
| ||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||| || |  ||||| || || |||||||| ||| ||||||| ||||    ||| | | |||| ||  |  |  |||||      || |      ||      | |  |  | ||||  | | |||| ||             
AGTGTTCGAAGAAATACGCAGTTCAATCTGATTGGAAAGCTCACTCGAAGATTTGTGGAACAAGGGAGTACAAGTGCGATTGTGGGACTTTGTTTTCAAGgttcttagtttcttccttcttgtacattctacatcttttcaagtatggttttttggggttttgggatcttgaaagctctttgctttggttatttgaag

upper sequence: AT3G50700.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S43_228V6.1 (Physcomitrella patens), 5'ss of exon 2
AATGTTCTAAGAAATACGCTGTTCAATCTGATTGGAAAGCTCATTCCAAGATTTGTGGTACTAAAGAGTATAAATGTGATTGTGGTACTCTGTTTTCTAGgtaaagtgtttgccttttttgatcatacataagaaaaaattcaaaattcaacaatctaagttttgagtgatttttgtttgcag-------------------
| || ||||||| ||||||||||||||| || ||||| || || || |||| ||||||||||  ||||||    || ||||||||||| || || || |||||| ||   ||| |  ||  ||   |  | |  || | ||  |  |  || |   |        ||  | | | |||   |                    
AGTGCTCTAAGAGATACGCTGTTCAATCCGACTGGAAGGCCCACTCTAAGACTTGTGGTACTCGAGAGTACCGCTGCGATTGTGGTACCCTTTTCTCCAGgtaaggt-cctgcatggttc-attgcatttgatgaatatttgcacgtgaaaaagatttgacaagaagctactgtggttcataaacgtggaggttaagaagcc

upper sequence: AT3G50700.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S63_51V6.1 (Physcomitrella patens), 5'ss of exon 2
AATGTTCTAAGAAATACGCTGTTCAATCTGATTGGAAAGCTCATTCCAAGATTTGTGGTACTAAAGAGTATAAATGTGATTGTGGTACTCTGTTTTCTAGgtaaagtgtt----tgccttttttg---------atcatacataagaaaaaattcaaaattcaacaatctaagttttgagt-gatttttgtttgcag---
| || ||||||| ||||||||||||||| || ||||| || || || |||| ||||||||||  ||||||    || |||||||| ||  | ||||| |||| |  |  |    ||  | |||||           |||   |   | |   ||   || |   ||  |      ||| |  || ||  |   |||    
AGTGCTCTAAGAGATACGCTGTTCAATCCGACTGGAAGGCCCACTCTAAGACTTGTGGTACTCGAGAGTACCGCTGCGATTGTGGGACCTTATTTTCCAGgtgagattctcttgtggttcttttgcatacgatggacatctcttgcacagggttgtgaagttggcagaccgtacgttgcgaagacttccggaagcacctt

upper sequence: AT3G50700.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S125_69V6.1 (Physcomitrella patens), 5'ss of exon 2
AATGTTCTAAGAAATACGCTGTTCAATCTGATTGGAAAGCTCATTCCAAGATTTGTGGTACTAAAGAGTATAAATGTGATTGTGGTACTCTGTTTTCTAGgtaaagtgtttgccttt----tttgatcatacataagaaaaaattcaa--aattcaacaatc---taagttttgagtgatttttgtttgcag--------
| || ||||||| ||||||||||||||| || ||||| || || || |||| ||||||||||  ||||||    || |||||||||||  | ||||| |||| |  |  |   | ||     ||   | || ||  |      ||| |   |  | |  | |    || |  |  |    || |||   |          
AGTGCTCTAAGAGATACGCTGTTCAATCCGACTGGAAGGCCCACTCTAAGACTTGTGGTACTCGAGAGTACCGCTGCGATTGTGGTACCTTATTTTCCAGgtcagtttctcctccttggttcttttccctagatgggtgtttcttccactgacacgatgagcagccaattcatagggtgcttgtgtcaactccgggaagc