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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTATGGTTTTGGAAAAGGAGATATTGGTCAGCTATTCATTGCTGGTTTTGGTTCGTCAATGTTGTTTGGAACTATTGTTGGATCTCTGGCTGACAAACAgtgagaaagctctctctcttatgttttaagtccgtgttgttggaggagaactatgtttaggcaactaatatctttgtgtgtgttggattcag

Basic information

species Arabidopsis thaliana
transcript AT3G49310.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G49310.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv16s0098g01290.t01 (Vitis vinifera), 5'ss of exon 2
CTTATGGTTTTGGAAAAGGAGATATTGGTCAGCTATTCATTGCTGGTTTTGGTTCGTCAATGTTGTTTGGAACTATTGTTGGATCTCTGGCTGACAAACAgtgagaaagctctctctcttatgttttaagtccgt-gttgtt--ggaggagaactat-gtttaggcaactaatatctttgtgtgtgttggattcag
| ||||| || |||||||| || ||||| ||| | || |||||||||||||| || || ||||||||||| || |||||||||||||| |||||||||||||||||   |   ||   |  |||| |   ||| | ||| ||  | |   |||   | |||| |      |||  |||  |      || || |||
CGTATGGCTTCGGAAAAGGGGAGATTGGACAGTTGTTTATTGCTGGTTTTGGGTCCTCCATGTTGTTTGGCACGATTGTTGGATCTCTAGCTGACAAACAgtgagatttcctactaaatgttgttgtggatccattgttctttagaattggaatcctagttttgattcacaatgccttcattcaa--tgaatgcag

upper sequence: AT3G49310.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv02s0025g02420.t01 (Vitis vinifera), 5'ss of exon 2
CTTATGGTTTTGGAAAAGGAGATATTGGTCAGCTATTCATTGCTGGTTTTGGTTCGTCAATGTTGTTTGGAACTATTGTTGGATCTCTGGCTGACAAACAgtgagaaagctctctctcttatgttttaagtccgtgttgttggaggagaactatgtttaggcaactaatatctttgtgtgtgttggattcag
  ||||||| ||| || || || ||||| ||  | || |||||||||||||| || || ||||||||||| || |||||||| ||||||||||| ||||||| |||      | ||  ||   ||||   |   ||    |  |    ||   || |      | | ||    || | |       ||| ||
AATATGGTTATGGGAAGGGGGACATTGGGCAATTGTTTATTGCTGGTTTTGGGTCCTCTATGTTGTTTGGGACAATTGTTGGGTCTCTGGCTGATAAACAgtaaga------tttccttttgattttgtttgtttgccagtctatattaat--tgatccattgattcatgatattttctacaccaaatttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86074066|gb|DR369823.1|DR369823
EST:     GGTTCGTCAATGTTGTTTGGAACTATTGTTGGATCTCTGGCTGACAAACA                         GGGTCGAHVGAGGGCATGTGTTACATACTGTATAGTTTACATACTAAGTTG
genomic: GGTTCGTCAATGTTGTTTGGAACTATTGTTGGATCTCTGGCTGACAAACAgtgagaaagc ... ttggattcagGGGTCGAAAGAGGGCATGTGTTACATACTGTATAGTTTACATACTAAGTTG
EST: gi|19876532|gb|AU237363.1|AU237363
EST:     GGTTCGTCAATGTTGTTTGGAACTATTGTTGGATCTCTGGCTGACAAACA                         GGGTCGAAAGAGGGCATGTGTTACATACTGTATAGTTTACATACTAAGTTG
genomic: GGTTCGTCAATGTTGTTTGGAACTATTGTTGGATCTCTGGCTGACAAACAgtgagaaagc ... ttggattcagGGGTCGAAAGAGGGCATGTGTTACATACTGTATAGTTTACATACTAAGTTG