1 5' 3' | 2 5' 3' | 3 5' 3' |
CACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTGgttagtagtagtaatgtcaacacttctgatattgtcatgtttcgttttaagtttacactacaatctctttgggtcttattatgttatgttgtacacag
species | Arabidopsis thaliana |
transcript | AT3G49010.5 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGTCAAGACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTG CGAGGCAAAAGAAGGCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTCEST: gi|124855932|gb|EH940369.1|EH940369
genomic: TGTCAAGACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTGgttagtagta ... ttgtacacagCGAGGCAAAAGAAGGCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTC
EST: GTCAAGTACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTG CGAGGCAAAAGAAGGCTGTGAAGATCTTEST: gi|124954575|gb|EL029658.1|EL029658
genomic: GTCAAG-ACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTGgttagtagta ... ttgtacacagCGAGGCAAAAGAAGGCTGTGAAGATCTT
EST: TCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTG CGAGGCAAAAGAAGGCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTCEST: gi|125048447|gb|EL120716.1|EL120716
genomic: TCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTGgttagtagta ... ttgtacacagCGAGGCAAAAGAAGGCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTC
EST: TGTCAAGACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTG CGAGGCAAAAGAAGGCTGTGAAGATCTTCCCTCGTCCAACTTCTEST: gi|125291489|gb|EL305574.1|EL305574
genomic: TGTCAAGACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTGgttagtagta ... ttgtacacagCGAGGCAAAAGAAGGCTGTGAAGATCTTCCCTCGTCCAACTTCT
EST: TGTCAAGACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTG CGAGGCAAAAGAAGGCTGTGAAGEST: gi|125222104|gb|EL236189.1|EL236189
genomic: TGTCAAGACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTGgttagtagta ... ttgtacacagCGAGGCAAAAGAAGGCTGTGAAG
EST: TTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTG CGAGGCAAAAGAAGGCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTCEST: gi|164017344|gb|EL974819.1|EL974819
genomic: TTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTGgttagtagta ... ttgtacacagCGAGGCAAAAGAAGGCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTC
EST: GCCAGGAAAACCNGAAGAAGAATTG CGAGGCAAAAGAAGGCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTCEST: gi|152037762|gb|BP796635.2|BP796635
genomic: GCCAGGAAAACCAGAAGAAGAATTGgttagtagta ... ttgtacacagCGAGGCAAAAGAAGGCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTC
EST: TGTCAAGACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTG CGAGGCAAAAGAAGGCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTCEST: gi|124749000|gb|EH839130.1|EH839130
genomic: TGTCAAGACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTGgttagtagta ... ttgtacacagCGAGGCAAAAGAAGGCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTC
EST: GTCAAGTACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTG CGAGGCAAAAGAAGGCTGTGAAGATCTTCCCTCG
genomic: GTCAAG-ACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTGgttagtagta ... ttgtacacagCGAGGCAAAAGAAGGCTGTGAAGATCTTCCCTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTGgttagtagtagtaatgtcaacacttctgatattgtcatgtttcgttttaagtttacactacaatctctttgggtcttattatgttatgttgtacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG