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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCGCGGTTTATCTGATGGTTTACCAAAGATCATCAAATCCGAAGGCTTCCGCGGGTTACACAAAGGACTTGTTCCTCTCTGGGGACGCCAGATTCCATgtaagtctctatacacaagaaaatgtagtagagtcattgagatgatgatttcagttactaaaagaaaattcgacttctttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G48850.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G48850.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: EFJ31007 (Selaginella moellendorffii), 5'ss of exon 3
GCCCGCGGTTTATCTGATGGTTTACCAAAGATCATCAAATCCGAAGGCTTCCGCGGGTTACACAAAGGACTTGTTCCTCTCTGGGGACGCCAGATTCCATgtaagtctctatacacaagaaaatgtagtagagtcattgagatgatgatttcagttactaaaagaaaattcgacttctttgcag
                                                          |  ||| |||||| || ||||||||||||||||| ||||||||||||       || |  | |     |  |  |  |  || ||| |   |||| | | |         ||    ||  | ||||
--------------------------------------------------------ACTTTACAGAGGACTGGTACCTCTCTGGGGACGCCAAATTCCATgtaagctatccaactctcggacgca-aacacggcgaaagaaatggt---ttcactgattggg------ttgtcgtttatggcag

upper sequence: AT3G48850.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: EFJ34707 (Selaginella moellendorffii), 5'ss of exon 3
GCCCGCGGTTTATCTGATGGTTTACCAAAGATCATCAAATCCGAAGGCTTCCGCGGGTTACACAAAGGACTTGTTCCTCTCTGGGGACGCCAGATTCCATgtaagtctctatacacaagaaaatgtagtagagtcattgagatgatgatttcag--ttactaaaagaaaattcgacttctttgcag
                                                          |  ||| |||||| || ||||||||||||||||| ||||||||||||       || |  |||     |  |     |  || ||| |  || | |  ||  |      ||||||   ||  | ||||
--------------------------------------------------------ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCATgtaagctatccaactctcgaacgca-aacacgacgaaagaaatggtttttgctgacttgtttgtgacaaattctcgtttctggcag

upper sequence: AT3G48850.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: EFJ34706 (Selaginella moellendorffii), 5'ss of exon 3
GCCCGCGGTTTATCTGATGGTTTACCAAAGATCATCAAATCCGAAGGCTTCCGCGGGTTACACAAAGGACTTGTTCCTCTCTGGGGACGCCAGATTCCATgtaagtctctatacacaagaaaatgtagtagagtcattgagatgatgatttcagttactaaaagaaaattcgacttctttgcag
                                                          |  ||| |||||| || ||||||||||||||||| ||||||||||||       || |  | |     |  |||       |    ||| ||||| | | |         ||    ||  | ||||
--------------------------------------------------------ACTTTACAGAGGACTGGTACCTCTCTGGGGACGCCAAATTCCATgtaagctatccaactctcggacgccaacaaga----cgaaagaaatggtttcactgattggg------ttgtcgtttatggcag