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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGAGATGAATAGAGGAAGGTTTGAAGATCCTACTTTTAAGTTTCAGATACCTCTTCAAATTGCGGCTGAGCGTGAAATCGCGAGGTCGTTGATAGGAGgtatgcattttatcttgttgaatcttttgagtgtgtggtcatgagtgttgagttcttgacgttgagaagttgttgttacgcttttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G47730.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G47730.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os08g30740.1 (Oryza sativa), 5'ss of exon 2
CCAGAGATGAATAGAGGAAGGTTTGAAGATCCTACTTTTAAGTTTCAGATACCTCTTCAAATTGCGGCTGAGCGTGAAATCGCGAGGTCGTTGATAGGAGgtat-gc--attttat-cttgttgaatcttttgagtgtgtggtcatgagtgttgagttcttgacgttgagaagttgttgttacgcttttgcag-------
|| |        |||||||  | ||| |||||||| || ||||| |||||||| ||||||||||| |||||| | ||||| ||||||  | |||| |||||||| ||   ||  || | | ||   |   ||  |||  | ||  |  ||      |   | |                || || || | |||       
CCGGTAGCTCGGAGAGGAACATATGAGGATCCTACCTTCAAGTTCCAGATACCACTTCAAATTGCAGCTGAGAGGGAAATGGCGAGGCTGCTGATTGGAGgtattgctacttccatgccttttttgttacttctgtgctttgtacttggtaccacttatgtcataccctttgacatcaattccggttgttcagtaattca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125211423|gb|EL226377.1|EL226377
EST:     ACCTCTTCAAATTGCGGCTGAGCGTGAAATCGCGAGGTCGTTGATAGGAG                         ATCCGAACTTTAATTGGGTTGTTGGGTTTAAGGAGTTTCCT
genomic: ACCTCTTCAAATTGCGGCTGAGCGTGAAATCGCGAGGTCGTTGATAGGAGgtatgcattt ... gcttttgcagATCCGAACTTTAATTGGGTTGTTGGGTTTAAGGAGTTTCCT
EST: gi|124877618|gb|EH957055.1|EH957055
EST:     ACCTCTTCAAATTGCGGCTGAGCGTGAAATCGCGAGGTCGTTGATAGGAG                         ATCCGAACTTTAATTGGGTTGTTGGGTTTAAGGAGTTTCCTCACCC
genomic: ACCTCTTCAAATTGCGGCTGAGCGTGAAATCGCGAGGTCGTTGATAGGAGgtatgcattt ... gcttttgcagATCCGAACTTTAATTGGGTTGTTGGGTTTAAGGAGTTTCCTCACCC