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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGCTCACCGCAAGTGTGTTCAGCGTTGGTGTAATGAGAAAGGCGACATAACCTGTGAAATATGTCACCAGgttaatcatcactctgctgctaaatgttgtatcttatctaactgctattgacactaaagagaataccaattacaactaaaatgctctctttttttttaacag

Basic information

species Arabidopsis thaliana
transcript AT3G47550.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301501426|gb|HO206966.1|HO206966
EST:     AGCGTTGGTGTAATGAGAAAGGCGACATAACCTGTGAAATATGTCACCAG                         CCTTATCAACATGGATACACTGCACCTCCGCCTCCTCCTCCTGATGAAACT
genomic: AGCGTTGGTGTAATGAGAAAGGCGACATAACCTGTGAAATATGTCACCAGgttaatcatc ... tttttaacagCCTTATCAACATGGATACACTGCACCTCCGCCTCCTCCTCCTGATGAAACT
EST: gi|116399259|gb|EG441851.1|EG441851
EST:     AGCGTTGGTGTAATGAGAAAGGCGACATAACCTGTGAAATATGTCACCAG                         CCTTATCAACATGGATACACTGCACCTCCGCCTCCTCCTCCTGATGAAACT
genomic: AGCGTTGGTGTAATGAGAAAGGCGACATAACCTGTGAAATATGTCACCAGgttaatcatc ... tttttaacagCCTTATCAACATGGATACACTGCACCTCCGCCTCCTCCTCCTGATGAAACT
EST: gi|125299520|gb|EL313605.1|EL313605
EST:     AGCGTTGGTGTAATGAGAAAGGCGACATAACCTGTGAAATATGTCACCAG                         CCTTATCAACA
genomic: AGCGTTGGTGTAATGAGAAAGGCGACATAACCTGTGAAATATGTCACCAGgttaatcatc ... tttttaacagCCTTATCAACA