1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTCTCACGGTTATATGGGTATGAGGAAGTGGATTATCCAGTACTGGAGACGGAGGCATTGTTCATCAGAAAAGCTGGGGAAGAGATTAGAGACCAAgttagtctttctctacatttcgaggatctttatctgcagttttatgtagaattgttagaagtatttagttccttagcttgcaaccttgttatgtag
species | Arabidopsis thaliana |
transcript | AT3G46100.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGACGGAGGCATTGTTCATCAGAAAAGCAGGGGAAGAGATTAGAGACCAA CTTTACTGCTTTGAAGATAGAGGAAATCGGCGTGTAGCATTGAGGCCTGAGEST: gi|164052641|gb|ES162571.1|ES162571
genomic: AGACGGAGGCATTGTTCATCAGAAAAGCTGGGGAAGAGATTAGAGACCAAgttagtcttt ... tgttatgtagCTTTACTGCTTTGAAGATAGAGGAAATCGGCGTGTAGCATTGAGGCCTGAG
EST: GATTAGAGACCAA CTTTACTGCTTTGAAGATAGAGGAAATCGGCGTGTAGCATTGAGGCCTGAGEST: gi|164059401|gb|ES214362.1|ES214362
genomic: GATTAGAGACCAAgttagtcttt ... tgttatgtagCTTTACTGCTTTGAAGATAGAGGAAATCGGCGTGTAGCATTGAGGCCTGAG
EST: GATTAGAGACCAA CTTTACTGCTTTGAAGATAGAGGAAATCGGCGTGTAGCATTGAGGCCTGAG
genomic: GATTAGAGACCAAgttagtcttt ... tgttatgtagCTTTACTGCTTTGAAGATAGAGGAAATCGGCGTGTAGCATTGAGGCCTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTCACGGTTATATGGGTATGAGGAAGTGGATTATCCAGTACTGGAGACGGAGGCATTGTTCATCAGAAAAGCTGGGGAAGAGATTAGAGACCAAgttagtctttctctacatttcgaggatctttatctgcagttttatgtagaattgttagaagtatttagttccttagcttgcaaccttgttatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA